| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,737,056 – 10,737,136 |
| Length | 80 |
| Max. P | 0.998397 |
| Location | 10,737,056 – 10,737,136 |
|---|---|
| Length | 80 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 65.80 |
| Shannon entropy | 0.55271 |
| G+C content | 0.46526 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -16.94 |
| Energy contribution | -16.74 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.35 |
| SVM RNA-class probability | 0.998397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10737056 80 + 24543557 GUAAAUUUGCGGAAUGCCUUUGAGGGGUUUCGCAAAAGAUGGGGGAAAUCUGGGGAGGUUUCUUUUCAAAAGGGGCCAUA--------------- .....((((((((((.((.....)).))))))))))((((.......)))).....(((..(((.....)))..)))...--------------- ( -26.30, z-score = -2.77, R) >droWil1.scaffold_180949 6285824 90 + 6375548 -----UCCACAUAGUAGCCGAUACGGAAUUUGUUAAGGGGGAGCGGAAAGUAAAUGUCAUUCACAUCCACAUCCACUUCGUCCAUUAUCAUCUUU -----.....((((...(((...)))...))))...(((((((.(((..((..((((.....))))..)).))).)))).)))............ ( -14.60, z-score = 0.50, R) >droEre2.scaffold_4784 10739413 77 + 25762168 GUAAAUUUGCGGAAUGCCUUUGAGGGGUUUCGCCAA-GAUGGGGGAAAUCUGGGGAGGUUUCUUUC--AAAGGGGCCAUA--------------- ..........(((((.((.....)).)))))(((..-..((..((((((((....))))))))..)--)....)))....--------------- ( -25.40, z-score = -1.75, R) >droSec1.super_0 2957423 77 + 21120651 GUAAAUUUGCGGAAUGCCUUUGAGGGGUUUCGCAAA-GAUGGGGGAAAUCUGAGGAGGUUUCUUUC--AAAGGGGCCAUA--------------- .....((((((((((.((.....)).))))))))))-..((..((((((((....))))))))..)--)...........--------------- ( -28.40, z-score = -3.73, R) >droSim1.chr3L 10130235 77 + 22553184 GUAAAUUUGCGGAAUGCCUUUGAGGGGUUUCGCAAA-GAUGGGGGAAAUCUGGGGAGGUUUCUUUC--AAAGGGGCCAUA--------------- .....((((((((((.((.....)).))))))))))-..((..((((((((....))))))))..)--)...........--------------- ( -28.40, z-score = -3.70, R) >consensus GUAAAUUUGCGGAAUGCCUUUGAGGGGUUUCGCAAA_GAUGGGGGAAAUCUGGGGAGGUUUCUUUC__AAAGGGGCCAUA_______________ .....((((((((((.((.....)).))))))))))..(((((((((((((....)))))))))...........))))................ (-16.94 = -16.74 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:55 2011