| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,714,458 – 10,714,552 |
| Length | 94 |
| Max. P | 0.541762 |
| Location | 10,714,458 – 10,714,552 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.06 |
| Shannon entropy | 0.46159 |
| G+C content | 0.41731 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -9.52 |
| Energy contribution | -9.89 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541762 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10714458 94 + 24543557 --------------------UACUCAUCGUUUUUGUUGUGGCAUGCAAAAUC--UGCUCAACUAAUGAAUUCAAGCGUAUUAAUUAUUACGCAUACGCCACAUUGUACGAAGGCCG --------------------........((((((((((((((..(((.....--))).................(((((........)))))....))))))....)))))))).. ( -24.70, z-score = -2.60, R) >droSim1.chr3L 10107818 94 + 22553184 --------------------UACUCAUCGUUUUUGUUGUGGCAUGCAAAAUC--UGCUCAACUAAUGAAUUCAAGCGUAUUAAUUAUUACGCAUACGCCACAUUGUACGAAGGCCG --------------------........((((((((((((((..(((.....--))).................(((((........)))))....))))))....)))))))).. ( -24.70, z-score = -2.60, R) >droSec1.super_0 2935220 94 + 21120651 --------------------UACUCAUCGUUUUUGUUGUGGCAUGCAAAAUC--UGCUCAACUAAUGAAUUCAAGCGUAUUAAUUAUUACGCAUACGCCACAUUGUACGAAGGCCG --------------------........((((((((((((((..(((.....--))).................(((((........)))))....))))))....)))))))).. ( -24.70, z-score = -2.60, R) >droYak2.chr3L 10725586 94 + 24197627 --------------------UACUCAUCGUUUUUGUUGUGGCAUGCAAAAUC--UGCUCAACUAAUGAAUUCAAGCGUAUUAAUUAUUACGCAUACGCCACAUUGUACGAAGGCCG --------------------........((((((((((((((..(((.....--))).................(((((........)))))....))))))....)))))))).. ( -24.70, z-score = -2.60, R) >droEre2.scaffold_4784 10716350 94 + 25762168 --------------------UACUCAUCGUUUUUGUUGUGGCAUGCAAAAUC--UGCUCAACUAAUGAAUUCAAGCGUAUUAAUUAUUACGCAUACGCCACAUUGUACGAAGGCCG --------------------........((((((((((((((..(((.....--))).................(((((........)))))....))))))....)))))))).. ( -24.70, z-score = -2.60, R) >droAna3.scaffold_13337 15626355 96 + 23293914 ------------------CAUAUUCAUCGUUUUUGUCGUGGCAUGCAAAAUC--UGCUCAACUAAUGAAUUCAAGCGUAUUAAUUAUUACGCAUACGCCACAUUGUACGAAGGCCG ------------------..........((((((((((((((..(((.....--))).................(((((........)))))....)))))...).)))))))).. ( -22.60, z-score = -1.80, R) >dp4.Unknown_group_366 9865 97 + 12797 -----------------GUCGCCUCGUUUUUGCGGCUGUGGCAUGGAAAAUCGGCGCUCAACUAAUGAAUUCAAGCGCAUUAAUUAUUACGCAUACGCCGCGUUG--CGAAGGCCG -----------------...(((((((...((((((.(((((.(((.......(((((...............)))))........))).)).)))))))))..)--)).)))).. ( -30.42, z-score = -0.31, R) >droWil1.scaffold_180949 53173 113 - 6375548 GUCAUACCCAUUCCCGUUUUCAGUUCAC-UCUCCGUCCUGGCAUGCAAAAUC--UGCUCAACUAAUGAAUUCAAGCGUAUUAAUUAUUACGCAUACGCCACAUUGUGCGAAGGACG ............................-....((((((.(((((((.....--))).................(((((........)))))............))))..)))))) ( -22.10, z-score = -1.31, R) >droVir3.scaffold_13049 10055722 91 + 25233164 -----------------------UACACAUCCUUGGCAUGGCAUGCAAAAUC--UGCUCAACUAAUGAAUUCAAGCGUAUUAAUUAUUACGCAUACGCCACAUUGUGCGAAGGACG -----------------------......(((((.(((((((..(((.....--))).................(((((........)))))....)))).....))).))))).. ( -25.00, z-score = -2.89, R) >droMoj3.scaffold_6680 14033209 91 - 24764193 -----------------------UACAUAUCCUUGGCAUGGCAUGCAAAAUC--UGCUCAACUAAUGAAUUCAAGCGUAUUAAUUAUUACGCAUACGCCACAUUGUGCGAAGGACG -----------------------......(((((.(((((((..(((.....--))).................(((((........)))))....)))).....))).))))).. ( -25.00, z-score = -2.83, R) >droGri2.scaffold_15110 3943692 90 - 24565398 -----------------------UGCACAUCCUUGGCAUU-CAUGGAAAAUC--UGCUCAACUAAUGAAUUCAAGCGUAUUAAUUAUUACGCAUACGGCACAUUGUGCGAAGGACG -----------------------......(((((.((((.-.((((.....)--((((.......((....)).(((((........)))))....))))))).)))).))))).. ( -20.70, z-score = -1.41, R) >apiMel3.Group16 4676791 91 + 5631066 -----------------------UCCGUCUCGUUGAAAUGGCG-GUCCAAUGAUCCAUCUGCCGAGGAAACUAUAAAUACCAAAACUUACCCUUAUCGCG-AUUGGAUUGUCGCUA -----------------------.(((((..........))))-)....(..(((((..(((.((((.......................))))...)))-..)))))..)..... ( -17.90, z-score = -0.09, R) >consensus ____________________UACUCAUCGUUUUUGUUGUGGCAUGCAAAAUC__UGCUCAACUAAUGAAUUCAAGCGUAUUAAUUAUUACGCAUACGCCACAUUGUACGAAGGCCG ......................................((((...............(((.....)))......(((((........)))))....))))................ ( -9.52 = -9.89 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:53 2011