| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,695,459 – 10,695,560 |
| Length | 101 |
| Max. P | 0.703337 |
| Location | 10,695,459 – 10,695,560 |
|---|---|
| Length | 101 |
| Sequences | 10 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 82.53 |
| Shannon entropy | 0.35706 |
| G+C content | 0.50962 |
| Mean single sequence MFE | -34.04 |
| Consensus MFE | -23.85 |
| Energy contribution | -24.06 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.703337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10695459 101 - 24543557 ----------GAACAUGUGUGCGUAUCCUUUAUGGAUUUAAUCCGCAUGCCUGCGGUCGGCCACAAGAUCAACUGUUGGCAGAAGUGUGUCAACAAGAUGGCUCGGCCUCC ----------...((.(((((((.((((.....))))......))))))).)).(((((((((.....((...((((((((......)))))))).)))))).)))))... ( -33.60, z-score = -1.54, R) >droSim1.chr3L 10087612 101 - 22553184 ----------GAACAUGUGUGCGUAUCCUUUAUGGAUUUAAUCCGCAUGCCUGCGGUCGGCCACAAGAUCAACUGUUGGCAGAAGUGUGUCAACAAGAAGGCUCGGCCUCC ----------...((.(((((((.((((.....))))......))))))).)).((((((((...((.....))(((((((......))))))).....))).)))))... ( -32.50, z-score = -1.35, R) >droSec1.super_0 2916251 101 - 21120651 ----------GAACAUGUGUGCGUAUCCUUUAUGGAUUUAAUCCGCAUGCCUGCGGUCGGCCACAAGAUCAACUGUUGGCAGAAGUGUGUCAACAAGAUGGCUCGGCCUCC ----------...((.(((((((.((((.....))))......))))))).)).(((((((((.....((...((((((((......)))))))).)))))).)))))... ( -33.60, z-score = -1.54, R) >droYak2.chr3L 10705687 101 - 24197627 ----------GAACAUGUGUGCGUAUCCUUUAUGGAUUUAAUCCGCAUGCCUGCGGUCGGCCACAAGAUCAACUGUUGGCAGAAGUGUGUCAACAAGGAGGCUCGGCCUCC ----------((.(.((((.((..((((.....)))).....(((((....)))))...)))))).).))...((((((((......)))))))).((((((...)))))) ( -35.50, z-score = -1.86, R) >droEre2.scaffold_4784 10694352 101 - 25762168 ----------GAACAUGUGUGCGUAUCCUUUAUGGAUUUAAUCCGCAUGCCUGCGGUCGGCCACAAGAUCAACUGUUGGCAGAAGUGUGUCAACAAGGAGGCUCGGCCUCC ----------((.(.((((.((..((((.....)))).....(((((....)))))...)))))).).))...((((((((......)))))))).((((((...)))))) ( -35.50, z-score = -1.86, R) >droAna3.scaffold_13337 15607275 101 - 23293914 ----------GGACAUGUGUGCGUAUCCUUUAUGGAUUUAAUCCGCAUGCCUGCGGUCGGCCACAAGAUCAACUGUUGGCAGAAGUGUGUCAACAAGGAGGCCAGGCCUCC ----------.((((..((((((.((((.....))))......)))))(((.(((((.(..(....)..).))))).)))....)..)))).....((((((...)))))) ( -35.50, z-score = -1.41, R) >droPer1.super_82 261283 109 - 267963 GAUGUGUGUGUGGCGUGUGUGCAUAUCCUUUAUGGUUUUAAUCCGCAUGCCUGCGGCUGGCCGCAAGAUCAACUGUUGGCAGAAGUGUGUCAACAAGGAGGCAAGGACC-- ((((((((..(.....)..))))))))..............(((...(((((((((....)))))...((...((((((((......))))))))..)))))).)))..-- ( -35.20, z-score = -0.17, R) >droMoj3.scaffold_6680 14012636 96 + 24764193 -AUGUUGGCUUGUGUU-UGUGCGUAUCCUUUAUGGAUUAAAUCCGCAUGCCUGCGGUUGGCCACAAGAUCAACUGUUGGCAGAAGUAUGUCAACACGA------------- -..(((((((((((..-.(((((.((((.....))))......)))))(((.......))))))))).)))))((((((((......))))))))...------------- ( -33.30, z-score = -2.37, R) >droVir3.scaffold_13049 10035645 98 - 25233164 -GCGUGUGCUUGUGCUGUGUGCGUAUCCUUUAUGGAUUAAAUCCGCAUGCCUGCGGUUGGCCACAAGAUCAACUGUUGGCAGAAGUAUGUCAACACGAC------------ -.(((((...((((((..(((((.((((.....))))......)))))(((.(((((((..(....)..))))))).)))...))))))...)))))..------------ ( -35.40, z-score = -2.19, R) >droGri2.scaffold_15110 3924316 109 + 24565398 -GAGUGUGUUUGUGUU-UGUGCGUAUCCUUUAUGGAUUAAAUCCGCAUGCCUGCGGUCGGCCACAAGAUCAACUGUUGGCAGAAGUAUGUCAACACGAGAGUACGACGUCC -..(((..((((((((-.(((((.((((.....))))......)))))(((.(((((.(..(....)..).))))).)))...........))))))))..)))....... ( -30.30, z-score = -0.31, R) >consensus __________GAACAUGUGUGCGUAUCCUUUAUGGAUUUAAUCCGCAUGCCUGCGGUCGGCCACAAGAUCAACUGUUGGCAGAAGUGUGUCAACAAGAAGGCUCGGCCUCC ...............((((.((..((((.....)))).....(((((....)))))...))))))........((((((((......))))))))................ (-23.85 = -24.06 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:47 2011