| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,692,216 – 10,692,330 |
| Length | 114 |
| Max. P | 0.703129 |
| Location | 10,692,216 – 10,692,330 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 62.55 |
| Shannon entropy | 0.68128 |
| G+C content | 0.39263 |
| Mean single sequence MFE | -23.57 |
| Consensus MFE | -11.56 |
| Energy contribution | -11.82 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.69 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.703129 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 10692216 114 - 24543557 AUUGUUUGUCCUUGUAGAUAGACGAGCACAGCAGGGUCCGCAAUAAUGGGUUGCGGAAUAUUGGAAUUUCGAUUAAUGCAUGU-AAAUGGGGGCUUACUAGUAACAAUAAUUGGG---- .(((((((((......)))))))))......(((..((((((((.....))))))))...))).....(((((((...(((..-..)))(..(((....)))..)..))))))).---- ( -28.30, z-score = -0.95, R) >droSim1.chr3L 10084110 112 - 22553184 AUUGUUUGUCCUUGUAGAU--ACGAGCACAGCAGGGUCCGCAAUAAUGGGUUGUGGAAUAUUGGGAUUCCGAUUAAUGCAUGU-GAAAGGGGGCUUACUAGUAACAAUAAUUGGG---- ...((..((((((((....--))...(((((((...((((((((.....))))))))..(((((....)))))...))).)))-)...))))))..)).................---- ( -27.20, z-score = -0.24, R) >droSec1.super_0 2913265 108 - 21120651 AUUGUUUGUCCUUGUAGAU--ACGAGCACAGCAGGGUCCGCAAUAAUGGGUUGUGGAAUAUUGGGAUUCCGAUCAAUGCAAGUAAAAGGG-----UACUAGUAACAAUAAUUGGG---- (((((((((.(((((....--))))).)))(((..(((((((((.....))))))))..(((((....))))))..))).((((......-----))))...)))))).......---- ( -24.50, z-score = -0.20, R) >droYak2.chr3L 10702170 117 - 24197627 AUUGUUUGUCCUUGUAGAU--ACGAGCACAGCGGGGUUCGCAAUAAUGGAUUGUGGGCUAUUGCUGUGCGGAUUAAUACAUGUAAAAGGGGGGCUUACUUGUAACAAUAAUCAAAUAGC .((((((((((((((....--))))(((((((((((((((((((.....)))))))))).))))))))))))....((((.((((.........)))).))))........))))))). ( -35.40, z-score = -2.73, R) >droEre2.scaffold_4784 10691202 86 - 25762168 AUUGUUUGUCCUUGUAGAU--ACGAGCACAGCUGGGUUCGCAAUAAUGGGUUGUGGAAUAUUGGGACUCAUAUUAUGCAAUAAUCAGU------------------------------- ......(((.(((((....--))))).)))(((((....(((...(((((((.(........).)))))))....))).....)))))------------------------------- ( -18.30, z-score = 0.10, R) >droAna3.scaffold_13337 15603533 88 - 23293914 --GGUAUGUCCUUGCAAAC--UCAAAUACAAACAUGGUACUUAUAAUGGUAUCCAACUUAUACAAUCACAAAUAAAUCUCUUAAAAGUAAAU--------------------------- --.((.(((..(((.....--.)))..))).)).(((((((......)))).))).....................................--------------------------- ( -7.70, z-score = -0.13, R) >consensus AUUGUUUGUCCUUGUAGAU__ACGAGCACAGCAGGGUCCGCAAUAAUGGGUUGUGGAAUAUUGGGAUUCCGAUUAAUGCAUGUAAAAUGGGG___UACUAGUAACAAUAAUUGGG____ .((((.(((.(((((......))))).)))))))..((((((((.....)))))))).............................................................. (-11.56 = -11.82 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:46 2011