| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,677,884 – 10,678,015 |
| Length | 131 |
| Max. P | 0.604026 |
| Location | 10,677,884 – 10,678,015 |
|---|---|
| Length | 131 |
| Sequences | 5 |
| Columns | 133 |
| Reading direction | reverse |
| Mean pairwise identity | 72.54 |
| Shannon entropy | 0.47913 |
| G+C content | 0.43466 |
| Mean single sequence MFE | -35.02 |
| Consensus MFE | -18.70 |
| Energy contribution | -18.58 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604026 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 10677884 131 - 24543557 AAUGAAAAAAGGGAAGGGUAUGCAAAAAAAAAAAAAUGUUCCCCCUUUCUAGUAACAAGCAGAAG--GGAGCUGUGUUUAAAUAGGGGUUAAGGGGGCGUGGCCCGGAAAAGGGAAUUUUGUGGCCGGUCUUC ..........((((..(((.(((((((........(((((((((((((((.((.....)))))))--))..((((......)))).......))))))))..(((......)))..))))))))))..)))). ( -35.90, z-score = -0.93, R) >droEre2.scaffold_4784 10676562 125 - 25762168 --AUUAUAAAGGAGUAUAUGCAAAAAAAUAAAAAAUGUUGUCCCCUUUCGGAAAACACAAAGAAG--UGAGCUGCGCUUAAAUAGGGGUUAAGGGGGCGUGGCCCGGAAGGGGGAAUUUUGUGGCCUUC---- --......((((......(((((((.((((.....)))).(((((((((((....(((......)--)).((..(((((.(((....)))....)))))..)))))))))))))..))))))).)))).---- ( -37.60, z-score = -2.26, R) >droYak2.chr3L 10676695 115 - 24197627 ------------AAUAAAAGGUGAUAUGCAAAAAAUGUUGUCCCCUUUCUGGAAACCCAAAGAAG--UGAGCUGUGUUUAAAUAGGGGUUAAGGGGGCGUGGCCCGGAAGGGGGAAUAUUGUGGCCUUC---- ------------.....(((((.(((.(((.....)))..((((((((((...(((((.......--(((((...))))).....)))))....((((...))))))))))))))....))).))))).---- ( -36.80, z-score = -1.92, R) >droSec1.super_0 2899216 120 - 21120651 ----AUAAAAAAAA---AAAUGC--AAAAAAAUG---UUUUCCCCUUUCUAGUAACAAGCAGAAGAAGGAGCUGUGUUUAAAUAGGGGUUAGGGGGGCGUGG-CCGGAAAAGGGAAUUUUGUGGCCGGCCUUC ----..........---......--.........---....((((((((((..(((((((..........))).))))....)))))...)))))(((.(((-(((.((((.....)))).)))))))))... ( -32.40, z-score = -0.81, R) >droSim1.chr3L 10069642 126 - 22553184 ---AAUAAAAAGGAUAUAUAUGCAAAAAAAAAUG---UUUUCCCCUUUCUAGUAACAAGCAGAAGAAGGAGCUGUGUUUAAAUAGGGGUUAGGGGGGCGUGG-CCGGAAAAGAGAAUUUUGUGGCCGGCCUUC ---...............................---....((((((((((..(((((((..........))).))))....)))))...)))))(((.(((-(((.((((.....)))).)))))))))... ( -32.40, z-score = -0.83, R) >consensus ____AAAAAAAGAAUAUAUAUGCAAAAAAAAAAAA__UUUUCCCCUUUCUAGUAACAAGCAGAAG__GGAGCUGUGUUUAAAUAGGGGUUAAGGGGGCGUGGCCCGGAAAAGGGAAUUUUGUGGCCGGCCUUC ........................................(((((((((((.......((((.........)))).......))))....)))))))...((.(((.((((.....)))).)))))....... (-18.70 = -18.58 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:43 2011