| Sequence ID | dm3.chr2L |
|---|---|
| Location | 528,275 – 528,355 |
| Length | 80 |
| Max. P | 0.559294 |
| Location | 528,275 – 528,355 |
|---|---|
| Length | 80 |
| Sequences | 5 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 84.69 |
| Shannon entropy | 0.27024 |
| G+C content | 0.41827 |
| Mean single sequence MFE | -16.10 |
| Consensus MFE | -11.88 |
| Energy contribution | -12.72 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 528275 80 - 23011544 GCUAUCUGAAAUCCCGACACCACAAUUUAAUGGAUCGAAAAAGG-CAUUCAAAGCUUUAUAUUCGCAAUCAUAAGUCGGGG ............((((((.(((........)))..((((.((((-(.......)))))...)))).........)))))). ( -18.50, z-score = -2.50, R) >droEre2.scaffold_4929 583232 81 - 26641161 CCCCUCGGAGAACCCGACACCACAGUUUUAUGGAUGGAAAAAAGCUAUUCAGAGCUUUAAAUACACAAUCAUAAAUCGGGG ((((((((.....)))).......(.(((((((.((....((((((......)))))).......)).))))))).))))) ( -20.90, z-score = -2.70, R) >droYak2.chr2L 515252 81 - 22324452 CCUCUCUUAAAACCCAACACCACAAUUUUAUGGAUCGAGAAAAGCCAUCCAGAGCUUUAAAUGCCCAAUCAUAAAUCGGGC ............(((...............(((((.(.......).)))))(.((.......)).)...........))). ( -9.80, z-score = 0.10, R) >droSec1.super_14 510998 81 - 2068291 GCUCUCUGAAAUCCCGACACCACAAUUUUAUGGAUCGAAAAAGGCCAUUCAAAGCUUUAUAUUUCCACUCAUAAGUCGGGG ............((((((.........(((((..(.(((((((((........)))))...)))).)..))))))))))). ( -17.30, z-score = -1.85, R) >droSim1.chr2L 536481 81 - 22036055 GCUCUCUGAAAUCCCGACACCACAAUUUUAUGGAUCGAAAAAUGCCAUUCAAAGCUUUAUAUUUCCCCUCAUAAGUCGGGG ............((((((.(((........)))...((((...((........))......)))).........)))))). ( -14.00, z-score = -0.72, R) >consensus GCUCUCUGAAAUCCCGACACCACAAUUUUAUGGAUCGAAAAAAGCCAUUCAAAGCUUUAUAUUCCCAAUCAUAAGUCGGGG ............((((((.(((........))).......(((((........)))))................)))))). (-11.88 = -12.72 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:04 2011