| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,629,487 – 10,629,584 |
| Length | 97 |
| Max. P | 0.596278 |
| Location | 10,629,487 – 10,629,584 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 76.65 |
| Shannon entropy | 0.47287 |
| G+C content | 0.34139 |
| Mean single sequence MFE | -21.87 |
| Consensus MFE | -12.93 |
| Energy contribution | -12.93 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596278 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10629487 97 - 24543557 -AAAAAAACGAAAUUCCAAAA---UGUAUUGAAUU-------AAUUGCA------AUUUAGGUCACCAUGUGCAGGGUGAGUCGUUGUUGUAGUUGUUG--UUUCGAUAACCACAC -....................---..(((((((.(-------(((((((------((...(((((((........))))).))...))))))))))...--.)))))))....... ( -21.40, z-score = -1.15, R) >droSim1.chr3L 10020519 101 - 22553184 CAAAAAAACGAAAUUCCAAAAUGUUGUAUUGAAUU-------AAUUGCA------AUUUAGGUCACCAUGUGCAGGGUGAGUCGUUGUUGUAGUUGUUG--UUUCGAUAACCACAC .....................(((..(((((((.(-------(((((((------((...(((((((........))))).))...))))))))))...--.)))))))...))). ( -22.90, z-score = -1.15, R) >droSec1.super_0 2850791 100 - 21120651 -AAAAAAACGAAAUUCCAAAAUGUUGUAUUGAAUU-------AAUUGCA------AUUUAGGUCACCAUGUGCAGGGUGAGUCGUUGUUGUAGUUGUUG--UUUCGAUAACCACAC -....................(((..(((((((.(-------(((((((------((...(((((((........))))).))...))))))))))...--.)))))))...))). ( -22.90, z-score = -1.36, R) >droYak2.chr3L 10627401 100 - 24197627 -AAAAAAACGAAAUUCCAAAAUGUUGUAUUGAAUU-------AAUUGCA------AUUUAGGUCACCAUGUGCAGGGUGAGUCGUUGUUGUAGUUGUUG--UUUCGAUAACCACAC -....................(((..(((((((.(-------(((((((------((...(((((((........))))).))...))))))))))...--.)))))))...))). ( -22.90, z-score = -1.36, R) >droEre2.scaffold_4784 10627126 100 - 25762168 -AAAAAAACGAAAUUCCAAAAUGUUGUAUUGAAUU-------AAUUGCA------AUUUAGGUCACCAUGUGCAGGGUGAGUCGUUGUUGUAGUUGUUG--UUUCGAUAACCACAC -....................(((..(((((((.(-------(((((((------((...(((((((........))))).))...))))))))))...--.)))))))...))). ( -22.90, z-score = -1.36, R) >droAna3.scaffold_13337 15535929 82 - 23293914 ------------------AAAUAUAC--UUGUAUUG------AAUUGCA------AUUUAGGUCACCAUGUGCAGGGUGAGUCGUUGUUGUAGUUGUUG--UUCCGAUAACCACAU ------------------........--.(((....------(((((((------((...(((((((........))))).))...)))))))))((((--(....))))).))). ( -17.10, z-score = -0.10, R) >dp4.chrXR_group6 9075093 99 - 13314419 ---------AAAAUACAUUUUUGUAAAAUUGUACUGAAAACAAAUUGCA------AUUUAGGUCACCAUGUCCAGGGUGAGUCGUUGUUGUAGUUGUUG--UUUCGAUAACCACAC ---------....((((....)))).........(((((...(((((((------((...(((((((........))))).))...)))))))))....--))))).......... ( -20.60, z-score = -0.52, R) >droPer1.super_35 322553 100 + 973955 --------AAAAAUACAUUUUUGUAAAAUUGUACUGAAAACAAAUUGCA------AUUUAGGUCACCAUGUCCAGGGUGAGUCGUUGUUGUAGUUGUUG--UUUCGAUAACCACAC --------.....((((....)))).........(((((...(((((((------((...(((((((........))))).))...)))))))))....--))))).......... ( -20.60, z-score = -0.53, R) >droWil1.scaffold_181017 229465 116 + 939937 AAAAAACCAAACACUUUUAAAUUUUUUGUUGUAUUGAAAAACAAUUGCAAUAUAUAUUUAGGUCACCAUGUGCAGGGUGAGUCGUUGUUGUAGUUGUUGUUUUUCGAUAACCACAC ..........................(((..(((((((((((((((((((((........(((((((........))))).))..)))))))...))))))))))))))...))). ( -24.80, z-score = -1.00, R) >droVir3.scaffold_13049 16429181 100 - 25233164 --------AACAACCUCUUAAAAUUUUGUA-AAAAAAAAAAUAACUGCA------AUUUAGGUCACCAUGUACAGGGUGAGUCGUUGUUGUAGUUGUUG-UUUUCGAUAACCACAC --------.................((((.-.((((...((((((((((------((...(((((((........))))).))...)))))))))))).-))))..))))...... ( -23.40, z-score = -2.05, R) >droMoj3.scaffold_6680 4470630 98 + 24764193 -------AAAAAAACUCUU-AAAUUUUGUU---AAAAUAAAUAACUGCA------AUUUAGGUCACCAUGUACAGGGUGAGUCGUUGUUGUAGUUGUUG-UUCUCGAUAACCACAC -------............-.....(((((---......((((((((((------((...(((((((........))))).))...)))))))))))).-.....)))))...... ( -22.20, z-score = -2.08, R) >droGri2.scaffold_15110 12305801 106 + 24565398 ---AAAAAAAAAAACCUUAAAAAACUUGUAUACAAAAAAUAUAACUGCA------AUUUAGGUCACCAUGUACAGGGUGAGUCGUUGUUGUAGUUGUUG-UUUUCGAUAACCACAC ---................................((((((((((((((------((...(((((((........))))).))...)))))))))).))-))))............ ( -20.70, z-score = -1.06, R) >consensus ___AAAAAAAAAAUUCCUAAAUGUUGUAUUGAAUU_______AAUUGCA______AUUUAGGUCACCAUGUGCAGGGUGAGUCGUUGUUGUAGUUGUUG__UUUCGAUAACCACAC ............................................................(((((((........))))).)).....(((.(((((((.....))))))).))). (-12.93 = -12.93 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:39 2011