| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,616,711 – 10,616,809 |
| Length | 98 |
| Max. P | 0.890782 |
| Location | 10,616,711 – 10,616,809 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 64.86 |
| Shannon entropy | 0.55112 |
| G+C content | 0.38452 |
| Mean single sequence MFE | -21.60 |
| Consensus MFE | -11.29 |
| Energy contribution | -12.10 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.890782 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10616711 98 + 24543557 --------------------CACUCUGUUCACAAUGGAGAGAAAAACUCACCUCGAAAGAGAGGAGAACUACUCACUUUUGUUUGAAACAAACUAUAUAUAUUU-CACUGAUUUCAAUG --------------------..((((((.....)))))).((((..(((..(((....)))..)))..............(((((...)))))........)))-)............. ( -18.90, z-score = -1.30, R) >droEre2.scaffold_4784 10614098 92 + 25762168 ----------CACUCAGUCACUCUCUGUUCACAAUGGAGAGGAAAACUCACCUCGCCAGAGCAGCGAACUGCUUAGCUCUGUUUAAAA--GCAACUAA---UUUAUA------------ ----------....((((...((.((((((....(((.((((........)))).))))))))).))))))....(((.(.....).)--))......---......------------ ( -21.00, z-score = -1.10, R) >droYak2.chr3L 10614284 109 + 24197627 CACUCGGAAAACCUCAGUCACUCUCUGUUAACAAUAAAGAGGAGAACUCACCUCGACAGAGAAGCGAACUACUUAACUCUGCUUAAAAAAGCAACUA----UUUAUAUUUAUA------ .....((....))..((((.(((((((((.........((((.(....).))))))))))).)).).))).........(((((....)))))....----............------ ( -19.40, z-score = -1.49, R) >droSec1.super_0 2838017 113 + 21120651 CACUCGGGAAACUUUAGUCACUCUCUGUUCACAAUGGAGAGGAAAACUCACCUCGAAAGAGGGGAGAACUACUCACUUCUGUUUAAGCCAACACCUAUUUAUUUAUAUUUAUA------ .....((.((((...(((..((((((((.....)))))))).....(((.((((....)))).)))........)))...))))...))........................------ ( -27.10, z-score = -1.97, R) >consensus __________ACCUCAGUCACUCUCUGUUCACAAUGGAGAGGAAAACUCACCUCGAAAGAGAAGAGAACUACUCACCUCUGUUUAAAACAACAACUAU___UUUAUAUUUAUA______ ....................((((((((.....)))))))).....(((..(((....)))..)))..................................................... (-11.29 = -12.10 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:38 2011