| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,552,650 – 10,552,777 |
| Length | 127 |
| Max. P | 0.890362 |
| Location | 10,552,650 – 10,552,741 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 90.00 |
| Shannon entropy | 0.13659 |
| G+C content | 0.55694 |
| Mean single sequence MFE | -25.73 |
| Consensus MFE | -24.23 |
| Energy contribution | -24.23 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.695899 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10552650 91 - 24543557 ---CUGUCGCUACAGUGCCAUCGUGGCUCUGGCCAC-----UGGUCACUUGGCCACUGGACUACAUAGCAUUGGAUACUACCAACCAAACCCACCACCU ---.....(((((((.(((.....))).))).(((.-----(((((....))))).)))......)))).((((......))))............... ( -26.60, z-score = -1.41, R) >droSec1.super_0 2771171 97 - 21120651 CUACUGUCGCUAC--UGCCAUCGUGGCUCUGGCCACUGCAGUGGUCACUUGGCCACUGGACUACAUAGCACUGGAUACUCGCAACCAAACCCACCACCU ........((((.--((...(((((((....)))))..((((((((....))))))))))...))))))..(((..........)))............ ( -27.60, z-score = -0.98, R) >droSim1.chr3L 9949201 92 - 22553184 CUACUGUCGCUAC--UGCCAUCGUGGCUCUGGCCAC-----UGGUCACUUGGCCACUGGACUCCAUAGCACUGGAUACUAACAACCAAACCCACCACCU .....(((((((.--.(((.....)))..))))((.-----(((((....))))).)))))((((......))))........................ ( -23.00, z-score = -1.18, R) >consensus CUACUGUCGCUAC__UGCCAUCGUGGCUCUGGCCAC_____UGGUCACUUGGCCACUGGACUACAUAGCACUGGAUACUAACAACCAAACCCACCACCU ........((((....((((..((((((.((((((......))))))...))))))))).)....))))..(((..........)))............ (-24.23 = -24.23 + -0.00)
| Location | 10,552,685 – 10,552,777 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 90.31 |
| Shannon entropy | 0.13119 |
| G+C content | 0.45936 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -22.60 |
| Energy contribution | -22.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.890362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10552685 92 - 24543557 UAAAUCAAUUAAUUUUACAGCUUAUUGUUGUUGCUACUGUCGCUAC-AGUGCCAUCGUGGCUCUGGCCAC-----UGGUCACUUGGCCACUGGACUAC ................(((((.....))))).....(.((.((((.-(((((((..(((((....)))))-----))).)))))))).)).)...... ( -25.00, z-score = -1.54, R) >droSec1.super_0 2771206 98 - 21120651 UAAAUCAAUUAAUUUUACAGCUUAUUGUUGUUGCUACUACUGUCGCUACUGCCAUCGUGGCUCUGGCCACUGCAGUGGUCACUUGGCCACUGGACUAC ................(((((.....)))))..........(((((((..(((.....)))..)))).....((((((((....)))))))))))... ( -29.60, z-score = -2.60, R) >droSim1.chr3L 9949236 93 - 22553184 UAAAUCAAUUAAUUUUACAGCUUAUUGUUGUUGCUACUACUGUCGCUACUGCCAUCGUGGCUCUGGCCAC-----UGGUCACUUGGCCACUGGACUCC ................(((((.....)))))..........(((((((..(((.....)))..))))((.-----(((((....))))).)))))... ( -23.70, z-score = -1.90, R) >consensus UAAAUCAAUUAAUUUUACAGCUUAUUGUUGUUGCUACUACUGUCGCUACUGCCAUCGUGGCUCUGGCCAC_____UGGUCACUUGGCCACUGGACUAC ................(((((.....)))))....................(((..((((((.((((((......))))))...)))))))))..... (-22.60 = -22.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:29 2011