| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,544,097 – 10,544,209 |
| Length | 112 |
| Max. P | 0.940799 |
| Location | 10,544,097 – 10,544,209 |
|---|---|
| Length | 112 |
| Sequences | 10 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 82.41 |
| Shannon entropy | 0.34192 |
| G+C content | 0.46853 |
| Mean single sequence MFE | -32.64 |
| Consensus MFE | -24.98 |
| Energy contribution | -24.49 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.940799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10544097 112 - 24543557 ------GCUGAUGCCCAAGAAGACUGGGAAAUUAAGUGCCCUGUUUUUUGGGCUAUCAUUAAAGCCUGUAUCCUGCGGGCGCGCCUCAUAAAUAUCGCCAAAGCAUAUUGAUGGCUAU ------((((((((((((((((...(((..........)))..)))))))))).)))).....((((((.....))))))))(((.....(((((.((....)))))))...)))... ( -39.70, z-score = -2.69, R) >droEre2.scaffold_4784 10540387 112 - 25762168 ------GCGGAUGCCCGAAGAGACUGGGAAAUUAAGUGCCCUGUUUUUCGGGCUAUCAUUAAAGCCCGUAUCCUGCGGGCGCGCCUCAUAAAUAUCGCCAAAGCAUAUUGAUGGCUAU ------((.(((((((((((((...(((..........)))..)))))))))).)))......((((((.....))))))))(((.....(((((.((....)))))))...)))... ( -43.60, z-score = -3.06, R) >droYak2.chr3L 10538089 118 - 24197627 AGUACUGCUGAUGCCCGAAGAGACUGGGAAAUUAAGUGCCCUGUUUUUCGGGCUAUCAUUAAAGCCCGUAUCCUGCGGGCGCGCCUCAUAAAUAUCGCCAAAGCAUAUUGAUGGCUAU ......((((((((((((((((...(((..........)))..)))))))))).)))).....((((((.....))))))))(((.....(((((.((....)))))))...)))... ( -43.70, z-score = -3.18, R) >droSec1.super_0 2762547 112 - 21120651 ------GCUGAUGCCCGAGAAGACUGCGAAAUUAAGUGCCCUGUUUUUUGGGCUAUCAUUAAAGCCCGUAUCCUGCGGGCGCGCCUCAUAAAUAUCGCCGAAGCAUAUUGAUGGCUAU ------((((((((((((((((...(((........)))....)))))))))).)))).....((((((.....))))))))(((.....(((((.((....)))))))...)))... ( -38.60, z-score = -2.47, R) >dp4.chrXR_group6 8957490 105 - 13314419 ----------CUCCUCCCGGAGACU-GGAAAUUAAGUGCCCUGUUUU--GGGCUAUCAUUAAAGCCCGUAUCCUGCGGGCGCGCCUCAUAAAUAUCGCCAAAGCAUAUUGAUGGUUAU ----------....(((.(....).-)))......((((((.((..(--(((((........))))))......))))))))(((.....(((((.((....)))))))...)))... ( -31.50, z-score = -1.28, R) >droPer1.super_35 186943 105 + 973955 ----------CUCCUCCCGGAGACU-GGAAAUUAAGUGCCCUGUUUU--GGGCUAUCAUUAAAGCCCGUAUCCUGCGGGCGCGCCUCAUAAAUAUCGCCAAAGCAUAUUGAUGGUUAU ----------....(((.(....).-)))......((((((.((..(--(((((........))))))......))))))))(((.....(((((.((....)))))))...)))... ( -31.50, z-score = -1.28, R) >droWil1.scaffold_181017 100117 97 + 939937 -------------------CCCAACUGGAAAUUAAGUGCCCUGUUUU--GGGCUAUCAUUAAAGCCUGUAUCCUGCGGGCGCGCCUCAUAAAUAUCGCCAAAGUAUAUUGAUGGCUAU -------------------.((....)).......((((((.((..(--(((((........))))))......))))))))((((((...((((.......))))..))).)))... ( -25.10, z-score = -0.37, R) >droVir3.scaffold_13049 16341962 87 - 25233164 ---------------------------GAAAUUAAGUGCCCUCUUUU--AGGCUAUCAUUAAAGCCUGUAUCCUGCGGGCGCGUCUCAUAAAUAUCGCC--AGCAUACUGAUGGCUAU ---------------------------........((((((.(...(--(((((........))))))......).))))))..............(((--(.(.....).))))... ( -24.80, z-score = -1.77, R) >droMoj3.scaffold_6680 4377195 87 + 24764193 ---------------------------GAAAUUAAGUGCCCUGUUUU--AGGCUAUCAUUAAAGCCUGUAUCCUGCGGGCGCGCCUCAUAAAUAUCGCC--AGCAUAUUGAUGGCUAU ---------------------------........(((((((((..(--(((((........))))))......))))).))))............(((--(.(.....).))))... ( -25.00, z-score = -1.21, R) >droGri2.scaffold_15110 12224953 87 + 24565398 ---------------------------GAAAUUAAGUGCCCUAUUUU--AGGGUAUCAUUAAAGCCUGUAUCCUGCGGGCGCGCCUCAUAAAUAUCGCC--AGCAUAUUGAUGACUAU ---------------------------.........(((((((...)--))))))(((((((.((((((.....))))))(((............))).--......))))))).... ( -22.90, z-score = -1.25, R) >consensus ___________U_C_C___GAGACU_GGAAAUUAAGUGCCCUGUUUU__GGGCUAUCAUUAAAGCCCGUAUCCUGCGGGCGCGCCUCAUAAAUAUCGCCAAAGCAUAUUGAUGGCUAU ...................................((((((........(((((........)))))((.....))))))))(((.....(((((.((....)))))))...)))... (-24.98 = -24.49 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:28 2011