Locus 689

Sequence ID dm3.chr2L
Location 4,763,334 – 4,763,441
Length 107
Max. P 0.775583
window914

overview

Window 4

Location 4,763,334 – 4,763,441
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.88
Shannon entropy 0.40803
G+C content 0.43215
Mean single sequence MFE -27.78
Consensus MFE -19.22
Energy contribution -18.50
Covariance contribution -0.72
Combinations/Pair 1.45
Mean z-score -1.35
Structure conservation index 0.69
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.65
SVM RNA-class probability 0.775583
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 4763334 107 - 23011544
GUCAUCAAAACAUUGCAGGAUAUGUUAUCUUGCUGU------------GUUUUUUCGUCAUUCUGCUUUCUGCUAAACAACAAUUUCCACCAGGGUCU-ACUAUUGGAUUCUAUGGGCUU
......(((((((.((((((((...)))))))).))------------)))))...((..((..((.....))..))..))....((((..(((((((-(....)))))))).))))... ( -25.60, z-score =  -2.41, R)
>droSim1.chr2L 4632646 119 - 22036055
GUCAUCAAAACAUCGCAGGAUAUGUUAUCUUGCUGCGCUUCCCGUAAGGUCUCUUCGUCAUUCUGUUUUUUGCUAAAAAAGAAUUUCCACCAGGGUCU-ACUGUUGGAUUCUACGGGCUU
..............((((((((...)))))))).......((((((..(((.....(..(((((.((((.....)))).)))))..)((.(((.....-.))).)))))..))))))... ( -28.40, z-score =  -1.50, R)
>droSec1.super_5 2859710 119 - 5866729
GUCAUCAAAACAUCGCAGGAUAUGUUACCUUGCUGCGCUUCCCGUAAGGUCUCUUCGUCAUUCUGUUUUUUGCUAAAAAAGAAAUUCCACCAGGGUCU-ACUGUUGGAUUCUACGGGCUU
(((..(((((....((((((((((..(((((((..........))))))).....))).))))))).))))).......((((..((((.(((.....-.))).))))))))...))).. ( -27.00, z-score =  -0.79, R)
>droYak2.chr2L 4771116 119 - 22324452
GACAUCAUCAUAUCGCAGGAUAUGUUGUCUUUCUCGACUUCUCGGAAGAUCUUCUCGUCAUCCUGCUUUUUGCCAAAUAGGAACUUCCACCAGGGUCU-AUCGUUGGAUUCUCCAGUUUG
..............((((((((((..(((((((..(....)..))))))).....))).))))))).......(((((.(((...((((...((....-.))..))))...))).))))) ( -27.40, z-score =  -0.72, R)
>droEre2.scaffold_4929 4838687 120 - 26641161
GAUAUCGACGUAUCGCAUGGUAUCUUAUCUUUCUGGACUUCCCGGAAGAUCUUUUCGUCAUCAUGCUUCUGGCCAAACAAGAACUUCCACCGCGGUCCAAUCGUUGGAUUCUCCAGACUU
(((((....)))))(((((((.........((((((.....))))))(((......)))))))))).(((((.......((((..((((..(((((...))))))))))))))))))... ( -30.51, z-score =  -1.31, R)
>consensus
GUCAUCAAAACAUCGCAGGAUAUGUUAUCUUGCUGCACUUCCCGGAAGGUCUUUUCGUCAUUCUGCUUUUUGCUAAAAAAGAACUUCCACCAGGGUCU_ACUGUUGGAUUCUACGGGCUU
(((...........((((((((((..(((((((..........))))))).....))).))))))).............((((..((((.(((.......))).))))))))...))).. (-19.22 = -18.50 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:23 2011