Locus 6888

Sequence ID dm3.chr3L
Location 10,510,265 – 10,510,380
Length 115
Max. P 0.510139
window9483

overview

Window 3

Location 10,510,265 – 10,510,380
Length 115
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 87.83
Shannon entropy 0.16769
G+C content 0.29565
Mean single sequence MFE -19.32
Consensus MFE -12.65
Energy contribution -14.43
Covariance contribution 1.78
Combinations/Pair 1.04
Mean z-score -2.30
Structure conservation index 0.65
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.03
SVM RNA-class probability 0.510139
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 10510265 115 - 24543557
GCUUCAGAUCUCAAAUACUCAUUUCAUCAUUUCCAAUUGUUUUGCAAUGGUAAAUAAUAGCGUGCUAUCGCAUUUUGAUAGCACAUAUUUGUUUCACUUUCAGUUUUAAUCUCAA
......((...((((((...........(((((((.(((.....)))))).))))......(((((((((.....))))))))).))))))..)).................... ( -21.60, z-score =  -2.85, R)
>droSim1.chr3L 9906781 115 - 22553184
GCUCUAGAUCUCAAUUACUCAUUUCAUCAUUUCAAAUGGCUUUGGAAUGGUAAUCAUUAACGUGCUAUCGCAUUUUGAUAACAAAUAUUAGUUUCACUUUCUGUUUUAAUCUCAA
....((((........(((......(((((((((((....)))))))))))....(((((.((((....)))).)))))..........))).......))))............ ( -16.46, z-score =  -1.26, R)
>droSec1.super_0 2725788 115 - 21120651
GCUCUAGAUUUCAAAUACUCAUUUCAUCAUUUCAAACUACUUUGGAAUGGUAAUCAUAAAAGUGCUAUAGCAUUUUGAUAACAAAUAUUUGUUUCACUUUCUGUUUUAAUCUCAA
......((...((((((........(((((((((((....))))))))))).((((...((((((....))))))))))......))))))..)).................... ( -19.90, z-score =  -2.78, R)
>consensus
GCUCUAGAUCUCAAAUACUCAUUUCAUCAUUUCAAAUUGCUUUGGAAUGGUAAUCAUUAACGUGCUAUCGCAUUUUGAUAACAAAUAUUUGUUUCACUUUCUGUUUUAAUCUCAA
......((...((((((........(((((((((((....)))))))))))....(((((.((((....)))).)))))......))))))..)).................... (-12.65 = -14.43 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:26 2011