| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,482,755 – 10,482,858 |
| Length | 103 |
| Max. P | 0.723864 |
| Location | 10,482,755 – 10,482,858 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 76.93 |
| Shannon entropy | 0.39439 |
| G+C content | 0.41022 |
| Mean single sequence MFE | -23.41 |
| Consensus MFE | -14.43 |
| Energy contribution | -15.70 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723864 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10482755 103 + 24543557 GUGGCGGUAAUGAAAUUGUUGGCAGCAAAUGUUGUCAACACUAAUACCUAAAUACC---ACCAU-ACUAUAUAUAUAUAUUUGUAUGUAGACACAUACGGGCUGCAC (..((((((.((....((((((((((....)))))))))).)).))))........---.....-.(((((((((......)))))))))..........))..).. ( -30.10, z-score = -2.57, R) >droAna3.scaffold_13337 15394191 80 + 23293914 GUGGCGGUAAUGAAAUUGUUGGCAGAAAAUGUUGUCAACACUAAUACUGAAAGAGCCCCCCCACAGACACACAUACACAA--------------------------- ((((.((.........(((((((((......)))))))))......((.....))...))))))................--------------------------- ( -15.60, z-score = -0.22, R) >droEre2.scaffold_4784 10475828 91 + 25762168 GUGGCGGUAAUGAAAUUGUUGGCAGCAAAUGUUGUCAACACUAAUACUUAAAUACC---ACCAU-ACCAUAUAU------------GUGGACACAUACGGGCUCCAC ((((.((((.......((((((((((....))))))))))............))))---.))))-.........------------(((((..(.....)..))))) ( -24.81, z-score = -1.62, R) >droYak2.chr3L 10474445 95 + 24197627 GUGGCGGUAAUGAAAUUGUUGGCAGCAAAUGUUGUCAACACUAAUACCUAAAUACUCGUACCACCACCACAUAU------------GUAGACACAUACGGGCUGCAC ((((.((((.(((...((((((((((....))))))))))...((......))..))))))).))))......(------------((((...(....)..))))). ( -26.20, z-score = -1.57, R) >droSec1.super_0 2693371 83 + 21120651 GUGGCGGUAAUGAAAUUGUUGGCAGCAAAUGUUGUCAACACUAAUACCUAAAUACC---ACCAU-ACUAUAUAU--------------------AUACGGGCUGCAC (..((((((.((....((((((((((....)))))))))).)).))))........---.((..-.........--------------------....))))..).. ( -21.86, z-score = -1.76, R) >droSim1.chr3L 9879964 83 + 22553184 GUGGCGGUAAUGAAAUUGUUGGCAGCAAAUGUUGUCAACACUAAUACCUAAAUACC---ACCAU-ACUAUAUAU--------------------AUACGGGCUGCAC (..((((((.((....((((((((((....)))))))))).)).))))........---.((..-.........--------------------....))))..).. ( -21.86, z-score = -1.76, R) >consensus GUGGCGGUAAUGAAAUUGUUGGCAGCAAAUGUUGUCAACACUAAUACCUAAAUACC___ACCAU_ACCAUAUAU____________________AUACGGGCUGCAC (((((((((.((....((((((((((....)))))))))).)).))))............((....................................))))))).. (-14.43 = -15.70 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:21 2011