| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,466,912 – 10,467,005 |
| Length | 93 |
| Max. P | 0.578679 |
| Location | 10,466,912 – 10,467,005 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 86.83 |
| Shannon entropy | 0.20277 |
| G+C content | 0.45619 |
| Mean single sequence MFE | -15.23 |
| Consensus MFE | -14.49 |
| Energy contribution | -14.30 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.578679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10466912 93 - 24543557 UAUACGCGCAGAUACCCAAAAAAAGGAGAAAGCCAACACAGAUACUCACAGUCACAUCCGUCUCGACACCGAAGUGCUGCAGUGUAAUUUCUC ..(((((((((.............((......))..(((.(((.......))).........(((....))).))))))).)))))....... ( -15.90, z-score = -0.54, R) >droSim1.chr3L 9862736 79 - 22553184 --------------CACAUAAAAAGGAGAAAGCCAACACAGAUACUCACAGUCACAUCCGUCUCGACACCGAAGUGCUGCAGUGUAAUUUCUC --------------...........((((((....((((.(.....).(((.(((.((.((......)).)).))))))..))))..)))))) ( -14.40, z-score = -0.76, R) >droSec1.super_0 2677396 83 - 21120651 ----------UAUACACAUAAAAAGGAGAAAGCCAACACAGAUACUCACAGUCACAUCCGUCUCGACACCGAAGUGCUGCAGUGUAAUUUCUC ----------...............((((((....((((.(.....).(((.(((.((.((......)).)).))))))..))))..)))))) ( -14.40, z-score = -0.85, R) >droYak2.chr3L 10457920 74 - 24197627 -------------------AAAAAGGAGAAAGCCAACACAGAUACUCACAGUCGCAUCCGUCUCGACACCGAAGUGCUGCAGUGUAAUUUCUC -------------------......((((((....((((.(((.......)))(((..((..(((....)))..)).))).))))..)))))) ( -16.20, z-score = -1.12, R) >consensus ______________CACAUAAAAAGGAGAAAGCCAACACAGAUACUCACAGUCACAUCCGUCUCGACACCGAAGUGCUGCAGUGUAAUUUCUC .........................((((((....((((.(.....).(((.(((.((.((......)).)).))))))..))))..)))))) (-14.49 = -14.30 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:18 2011