| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,444,165 – 10,444,275 |
| Length | 110 |
| Max. P | 0.563728 |
| Location | 10,444,165 – 10,444,275 |
|---|---|
| Length | 110 |
| Sequences | 10 |
| Columns | 125 |
| Reading direction | reverse |
| Mean pairwise identity | 65.26 |
| Shannon entropy | 0.71739 |
| G+C content | 0.45903 |
| Mean single sequence MFE | -28.73 |
| Consensus MFE | -13.20 |
| Energy contribution | -14.04 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.17 |
| Mean z-score | -0.55 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10444165 110 - 24543557 --CGUUGCGCCCACA-UUUACGGCCGU-----UGUUUUGGAGUGACCAAGCGUUUGUGU----UUGCCAUCGGCCAAUUGUCAUUAAUUAGCCAGCAAUUUUCUGUUGGCGGCUUUUAAUUU--- --......(((....-.....(((((.-----((..((((.....))))(((.......----.))))).)))))...............(((((((......)))))))))).........--- ( -31.10, z-score = -1.03, R) >droMoj3.scaffold_6680 20523362 89 - 24764193 --UGUUACGCCCACAUUUUGCAAGUAU-----UGCUGC-------------------------CUCCAUUUGGGCAUUUGGCAUUAAUUAGCCAGCAAUUUUCGC-UAAAGGCAUUUAAUUU--- --......(((....(((.((.((.((-----((((((-------------------------((......)))))..((((........))))))))).)).))-.)))))).........--- ( -21.70, z-score = -0.75, R) >droVir3.scaffold_13049 9003150 91 + 25233164 GGCGUUACGCCCACAUUUUGCUAGUGC-----UGCUGC-------------------------CGCCA-UUGGCCAUUUGGCAUUAAUUAGCCAGCAAUUUUCGCUUGGAGGCAUUUAAUUU--- (((((..(((.............))).-----.)).))-------------------------)(((.-...(((....))).........(((((.......)).))).))).........--- ( -21.22, z-score = 1.52, R) >droPer1.super_35 901482 101 - 973955 --UGUUGCGCCAACAUUAGGUCUCAACCGCCCUGUUCUCCUCCUGUCU-UCCCCCUCU--GUUUGCCUUUGGGCC-AUUGGCAUUA--UAGCCAGCAA-UUU--GCUGGUGG------------- --......(((((.....(((....)))((((................-.........--..........)))).-.)))))....--..((((((..-...--))))))..------------- ( -24.75, z-score = -0.11, R) >dp4.chrXR_group6 4466492 109 + 13314419 --UGUUGCGCCCACAUUUGGUGUC----------UCAGCCGCCUGUCUCCCCCCCUCU--GUUUGCCUUUGGGCCAAUUGGCAUUAAUUAGCCAGCAAUUUU--GCUGUUGGCGGCUUCUAAUUU --((..(((((.......))))).----------.))((((((..........((...--(((.(((....))).))).))...........(((((....)--))))..))))))......... ( -31.40, z-score = -0.83, R) >droAna3.scaffold_13337 15354882 119 - 23293914 --CGUUGCGCCCACA-UUCGAGUGUAUUGAAGUGUUUGGAUAUUUUUUGUUUUUUCCACACUGUAGCCAUCGGCCAUUUGGCAUUAAUUAGCCAGCAAUUUUCUGUUGGCGGCUUUUAAUUU--- --((.(((((.(...-...).))))).)).(((((..(((..............))))))))..((((....(((....)))........(((((((......)))))))))))........--- ( -31.34, z-score = -1.82, R) >droEre2.scaffold_4784 10434334 110 - 25762168 --CGUUGCGCCCACA-UUUGCUGCCGU-----UGUUAUGGAGUGACCAAGUGUUUGUGU----UUGCCAUCGGCCAAUUGGCAUUAAUUAGCCAGCAAUUUUCUGUUGGCGGCUUUUAAUUU--- --....((((..(((-((((...((((-----....))))......)))))))..))))----..(((....(((....)))........(((((((......)))))))))).........--- ( -32.80, z-score = -0.98, R) >droYak2.chr3L 10434314 110 - 24197627 --CGUUGCGCCCACA-UUUGCUGCCGU-----UGUUAUGGAGUGACCAAGUGCUUGUGU----UUGCCAUCGGCCAAUUGGCAUUAAUUAGCCAGCAAUUUUCUGUUGGCGGCUUUUAAUUU--- --....((((.....-.(..((.((((-----....))))))..)....))))......----..(((....(((....)))........(((((((......)))))))))).........--- ( -31.10, z-score = -0.14, R) >droSec1.super_0 2654046 110 - 21120651 --CGUUGCGCCCACA-UUUACUGCCGU-----UGUUUUGGAGUGAACAAGCGUUUGUGU----UUGCCAUCGGCCAAUUGGCAUUAAUUAGCCAGCAAUUUUCUGUUGGCGGCUUUUAAUUU--- --....((((.....-((((((.(((.-----.....)))))))))...))))......----..(((....(((....)))........(((((((......)))))))))).........--- ( -31.50, z-score = -0.82, R) >droSim1.chr3L 9839404 110 - 22553184 --CGUUGCGCCCACA-UUUACUGCCGU-----UGUUUUGGAGUGACCAAGCGUUUGUGU----UUGCCAUCGGCCAAUUGGCAUUAAUUAGCCAGCAAUUUUCUGUUGGCGGCUUUUAAUUU--- --....((((.....-.(((((.(((.-----.....))))))))....))))......----..(((....(((....)))........(((((((......)))))))))).........--- ( -30.40, z-score = -0.49, R) >consensus __CGUUGCGCCCACA_UUUGCUGCCGU_____UGUUUUGGAGUGACCAAGCGUUUGUGU____UUGCCAUCGGCCAAUUGGCAUUAAUUAGCCAGCAAUUUUCUGUUGGCGGCUUUUAAUUU___ ........(((.............................................................(((....)))........((((((........)))))))))............ (-13.20 = -14.04 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:17 2011