| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,438,388 – 10,438,481 |
| Length | 93 |
| Max. P | 0.559487 |
| Location | 10,438,388 – 10,438,481 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 74.27 |
| Shannon entropy | 0.46532 |
| G+C content | 0.50572 |
| Mean single sequence MFE | -30.80 |
| Consensus MFE | -18.12 |
| Energy contribution | -21.04 |
| Covariance contribution | 2.92 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10438388 93 + 24543557 UUUCCGCAGAAAAUAUCUUCUGCCACAUACGGUGGUCAUGGUGGU---------UAUGGCGGUUAUGGCCAUGGUGGUGGCUACGAUUAUGGCCCACAUGUG .....((((((......))))))(((((((.((((((((..(.((---------....)).)..)))))))).)).(((((((......))).))))))))) ( -34.80, z-score = -1.79, R) >droSim1.chr3L 9833719 90 + 22553184 UUUCCGCAGAAAAUAUCUUCUGCCACAUACGGUGGUCAUGGUGGU---------UAUGGCGGUUAUGGCCAUGGCGG---CUACGAUUAUGGCCCACAUGUG .....((((((......))))))(((((.(.((((((.((((.((---------((((((.......)))))))).)---))).)))))).).....))))) ( -33.00, z-score = -1.73, R) >droSec1.super_0 2648358 90 + 21120651 UUUCCGCAGAAAAUAUCUUCUGCCACAUACGGUGGUCAUGGUGGU---------UAUGGCGGUUAUGGCCAUGGCGG---CUACGAUUAUGGCCCACAUGUG .....((((((......))))))(((((.(.((((((.((((.((---------((((((.......)))))))).)---))).)))))).).....))))) ( -33.00, z-score = -1.73, R) >droYak2.chr3L 10428233 90 + 24197627 UUUCCGCAGAAAAUAUCUUAUGGCACAUACGGUGGUCAUGGUGGU---------UAUGGCGGUUAUGGCCAUGGUGG---CUGCGAUUAUGGCCCACAUGUG ....((((((.....))....(((.((((..(..(((((.(((((---------((((.....))))))))).))))---)..)...)))))))....)))) ( -28.90, z-score = -0.28, R) >droEre2.scaffold_4784 10428158 99 + 25762168 UUUCCGCAGAAAAUAUCUGCUGCCACAUACGGUGGUCAUGGUGGUCAUGGUGGUUAUGGCGGUUAUGGCCAUGGUGG---CUGCGAUUAUGGCCCACAUGUG .....(((((.....)))))...(((((...(.((((((((..(((((.(((((((((.....))))))))).))))---)..)...))))))))..))))) ( -39.00, z-score = -1.50, R) >droWil1.scaffold_181024 1663125 81 - 1751709 UUUCCAUAGAAAAUCGCAUGCA-UGUUUAUGGCCGUCGUAUCUUCCACG----CUAUGCCACCAGCAGCAGAAGCAG---CAGCAACUA------------- ...............((.(((.-((((..((((...(((.......)))----....))))..))))((....)).)---)))).....------------- ( -16.10, z-score = 0.22, R) >consensus UUUCCGCAGAAAAUAUCUUCUGCCACAUACGGUGGUCAUGGUGGU_________UAUGGCGGUUAUGGCCAUGGCGG___CUACGAUUAUGGCCCACAUGUG .....((((((......))))))(((((...(.(((((((((.((.........((((((.......)))))).........)).))))))))))..))))) (-18.12 = -21.04 + 2.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:16 2011