| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,432,536 – 10,432,639 |
| Length | 103 |
| Max. P | 0.732759 |
| Location | 10,432,536 – 10,432,639 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.72 |
| Shannon entropy | 0.40664 |
| G+C content | 0.31867 |
| Mean single sequence MFE | -24.27 |
| Consensus MFE | -13.10 |
| Energy contribution | -12.13 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.732759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10432536 103 - 24543557 AUACGAUAUUUUUCU--CAAUUGAAAUCGCAUCUGUGAAAUGAUAAUCUUGUAAAGAUUUUUAUUUGUUGGAUACGGUUUCAGGGGUCUCAGAUUUCGUAAAGAU- .(((((.((((....--(..(((((((((.(((((..((((((.(((((.....))))).))))))..))))).)))))))))..)....)))).))))).....- ( -27.60, z-score = -3.07, R) >droEre2.scaffold_4784 10422095 103 - 25762168 AUACGAUAUUUUUCU--CAAUUGAAAUCGCAUCUGUGAAAUGAUAAUCUUGUAAAGUUUUUUAUUAGUUGGAUACGGUUUCAGGGGUCUCCGAUUUCGUAGAGAU- ............(((--(...((((((((.((((.((((((....((((.(((((....))))).....))))...)))))).))))...))))))))..)))).- ( -22.30, z-score = -0.88, R) >droYak2.chr3L 10422280 103 - 24197627 AUACGAUAUUUUUCU--CAAUCGAAAUCGCAUCUGUGAAAUGAUAAUCUUGUAAAGUUUUUUAUUACUUGGAUACGGUUUCAGGGGUCUCUGAUUUCGUAGAGAU- ............(((--(...((((((((.((((.((((((..((.((..((((.........))))..)).))..)))))).))))...))))))))..)))).- ( -24.00, z-score = -1.56, R) >droSec1.super_0 2642547 103 - 21120651 AUACGAUAUUUUUCU--CAAUUGAAAUCGCAUCUGUGAAAUGAUAAUCUUGUAAAGAUUUUUAUUUGUUGGAUACGGUUUCAGGGGUCUCAGAUUUCGUAGAGAU- .(((((.((((....--(..(((((((((.(((((..((((((.(((((.....))))).))))))..))))).)))))))))..)....)))).))))).....- ( -27.60, z-score = -2.69, R) >droSim1.chr3L 9827911 100 - 22553184 AUACGAUAUUUUUCU--CAAUUGAAAUCGCAUCUGUGAAAUGAUAAUCUUGUAAAGAUUUUUAUUUGUUGGAUACGGUUUCA---GUCUCAGAUUUCGUAGAGAU- .(((((......(((--..((((((((((.(((((..((((((.(((((.....))))).))))))..))))).))))))))---))...)))..))))).....- ( -26.10, z-score = -2.65, R) >droGri2.scaffold_7992 986 106 - 5767 AAAAAAUAUUCUUCUGCUUGCUUACCUCUCAAUGGAGUGGAAAUAGCAUCACGGGAAUUUUCAAAAAAUGAGUACUGCUUGAAUAAUAUUUGGGUUGAUAAAGAAU .......(((((..((..((((..((.(((....))).))....)))).))..))))).((((.....))))..(.(((..(((...)))..))).)......... ( -18.00, z-score = -0.13, R) >consensus AUACGAUAUUUUUCU__CAAUUGAAAUCGCAUCUGUGAAAUGAUAAUCUUGUAAAGAUUUUUAUUAGUUGGAUACGGUUUCAGGGGUCUCAGAUUUCGUAGAGAU_ ............(((......(((((((..((((.((((((....((((.(((((....))))).....))))...)))))).))))....)))))))...))).. (-13.10 = -12.13 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:15 2011