| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,431,478 – 10,431,575 |
| Length | 97 |
| Max. P | 0.872313 |
| Location | 10,431,478 – 10,431,575 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 82.62 |
| Shannon entropy | 0.36059 |
| G+C content | 0.47361 |
| Mean single sequence MFE | -24.70 |
| Consensus MFE | -15.53 |
| Energy contribution | -17.30 |
| Covariance contribution | 1.77 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.872313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10431478 97 + 24543557 UUAAAAUAACGGCACGCCAACUUUCGCCGCAAAUCGUUCGCAACAGCAAAAAUGUUGCGAGCACGCGUGCGACAACACAAAACAACAAACAAACACG-- ..........((....)).....(((((((.....((((((((((.......))))))))))..))).)))).........................-- ( -25.90, z-score = -2.75, R) >droSim1.chr3L 9826809 97 + 22553184 UUAAAAUAACGGCACGCCAACUUUCGCCGCAAAUCGUUCGCAACAGCAAAAAUGUUGCGAGCACGCGUGCGACAACACAAAACAACAAACAAACACG-- ..........((....)).....(((((((.....((((((((((.......))))))))))..))).)))).........................-- ( -25.90, z-score = -2.75, R) >droSec1.super_0 2641534 97 + 21120651 UUAAAAUAACGGCACGCCAACUUUCGCCGCAAAUCGUUCGCAACAGCAAAAAUGUUGCGAGCACGCGUGCGACAACACAAAACAACAAACAAACACG-- ..........((....)).....(((((((.....((((((((((.......))))))))))..))).)))).........................-- ( -25.90, z-score = -2.75, R) >droYak2.chr3L 10421275 96 + 24197627 UUAAAAUAACGGCACGCCAACUUUCGCCGCAAAUCGUUCGCAACAGCAAAAAUGUUGCGAGCACGCGUGCGACAACACAAAACAACAAACAAACAC--- ..........((....)).....(((((((.....((((((((((.......))))))))))..))).))))........................--- ( -25.90, z-score = -2.99, R) >droEre2.scaffold_4784 10421135 96 + 25762168 UUAAAAUAACGGCACGCCAACUUUCGCCGCAAAUCGUUCGCAACAGCAAAAAUGUUGCGAGCACGCGUGCGACAAGACAAAACAACAAACAAACAC--- ..........((....))..((((((((((.....((((((((((.......))))))))))..))).)))).)))....................--- ( -27.40, z-score = -3.31, R) >droAna3.scaffold_13337 15343270 90 + 23293914 UUAAAAUAACGGCACGCCAACUUUCCCCGCAAAUCGAUCGCAGCAGCAAAAAUGUUGCGAGCGCGCGUGCGACAACAAAAAAACACACAC--------- ...........(((((((.........((.....)).((((((((.......))))))))..).))))))....................--------- ( -22.10, z-score = -1.43, R) >droWil1.scaffold_181024 1646299 99 - 1751709 UUAAAAUAACGGCACGCCAACUUUCGCCGCAAAUCGUUCGCAGCGGCAAAAAUGUUUCGCGCGUGCGCUAAGCAACACACACACACACAACUAAAUUGU ..........((....)).......(((((............))))).....(((((.(((....))).)))))......................... ( -19.60, z-score = 0.83, R) >droVir3.scaffold_13049 9016570 89 - 25233164 UUAAAAUAACGGCACGCCAACUUUCGCCGCAUUUC---CAGGCACACAAAAAUGUUGCGCGCGUGCGC--AGCAGCAACCAAUUGCUAAGCCCA----- .........((((............))))......---..(((..........(((((((....))))--)))(((((....)))))..)))..----- ( -24.90, z-score = -0.64, R) >consensus UUAAAAUAACGGCACGCCAACUUUCGCCGCAAAUCGUUCGCAACAGCAAAAAUGUUGCGAGCACGCGUGCGACAACACAAAACAACAAACAAACAC___ ...........((((((...........(.....)((((((((((.......))))))))))..))))))............................. (-15.53 = -17.30 + 1.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:14 2011