| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,420,379 – 10,420,470 |
| Length | 91 |
| Max. P | 0.754584 |
| Location | 10,420,379 – 10,420,470 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 71.19 |
| Shannon entropy | 0.50328 |
| G+C content | 0.39436 |
| Mean single sequence MFE | -17.67 |
| Consensus MFE | -7.13 |
| Energy contribution | -7.44 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.754584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10420379 91 - 24543557 ACCCACAUAGAUGGCGAUUAAACGGACAGCGAGAAGGAGAUAUGCAUGCUGAACCGAA--------ACCG-----AAAAUAGAGUCGUAUGUCUAUGCAAAUUU- .....((((((((((((((...(((.(((((.(...........).)))))..)))..--------..(.-----......))))))).)))))))).......- ( -18.20, z-score = -1.19, R) >droSim1.chr3L 9812603 90 - 22553184 ACCCACAUAGAUGGCGAUUAAACGGACAGCGAGUAGGAGAUAUGCAAGCUGAACCGAA--------ACC------GAAAUAGAGUCGUAUGUCUAUGCAAAUUU- .....((((((((((((((...(((.((((..(((.......)))..))))..)))..--------..(------......))))))).)))))))).......- ( -22.10, z-score = -2.45, R) >droSec1.super_0 2630537 90 - 21120651 ACCCACAUAGAUGGCGAUUAAACGGACAGCGAGUAGGAGAUAUGCAAGCUGAACCGAA--------ACC------GAAAUAGAGUCGUAUGUCUAUGCAAAUUU- .....((((((((((((((...(((.((((..(((.......)))..))))..)))..--------..(------......))))))).)))))))).......- ( -22.10, z-score = -2.45, R) >droEre2.scaffold_4784 10410050 104 - 25762168 ACCCACAUAGAUGGCGAUUAAGCGGACAGAGAGAAAGAGAUAUGCAAACCGAACUGAACCGAACGGACCGCAACCGAAAUAGAGUCGUAUGUCUAUGCAAAUUU- .....((((((((((((((..((((.(((........................)))..((....)).))))...(......))))))).)))))))).......- ( -19.96, z-score = -1.36, R) >droWil1.scaffold_181024 1629605 81 + 1751709 ACCCACAUAGAUGACGAUG--ACGAUUAAACAAUUACAAACACACA-------UCGAG--------GCG------AAAAUAAAGUCGUUCGUCUAUGCAAAUUU- .....((((((((((((((--.......................))-------)))..--------(((------(........))))))))))))).......- ( -16.00, z-score = -2.28, R) >droMoj3.scaffold_6680 4214415 86 + 24764193 ACCCACAUAGAUUACCAAAGUGCGAUU-AACAGUUACAAAUAUACA---AAAAAUACA--------UAC------AAAAUAGAGUCGUACGUCUAUGCAAAUUU- .....(((((((.......((((((((-............(((...---....)))..--------...------.......))))))))))))))).......- ( -11.96, z-score = -2.20, R) >droGri2.scaffold_15110 12101247 91 + 24565398 ACCCACAUAGAUGACCAAAGUGCGAUUAAACAAUUACAAAUAUAAACACACAGACAUA--------GCG------AAAAUAGAGUCGUACGUCUAUGCAAAUUUU .....((((((((......(((.(.(((..............))).).))).......--------(((------(........)))).))))))))........ ( -13.34, z-score = -2.13, R) >consensus ACCCACAUAGAUGGCGAUUAAACGGACAGAGAGUAAGAGAUAUGCAAGCUGAACCGAA________ACC______AAAAUAGAGUCGUAUGUCUAUGCAAAUUU_ .....(((((((((((((.................................................................))))).))))))))........ ( -7.13 = -7.44 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:11 2011