| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,363,519 – 10,363,610 |
| Length | 91 |
| Max. P | 0.688173 |
| Location | 10,363,519 – 10,363,610 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 78.18 |
| Shannon entropy | 0.38794 |
| G+C content | 0.48559 |
| Mean single sequence MFE | -31.30 |
| Consensus MFE | -16.89 |
| Energy contribution | -16.57 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.688173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10363519 91 - 24543557 CAUCGAUCGUAUAGAUUCGAGCAUAGAUCGGUUAUAUGGUGUCUAUAUGGUC------------GGUGGAGUGAUAAGCCCUGCUUUUCUGCUUUUGGCAUGC ((((((((((((((((...(.((((.........)))).)))))))))))))------------)))).........(((..((......))....))).... ( -28.70, z-score = -1.81, R) >droSim1.chr3L 9751869 91 - 22553184 CAUCGAUCGUAUAGAUCCGAGCAUAGAUCGCUUAUAUGGGGUCUAUAUGGUC------------GGUGGAGUGAUAAGCCCUGCUUUUCUGCUUUUGGCAUGC ((((((((((((((((((((((.......)))).....))))))))))))))------------)))).........(((..((......))....))).... ( -35.40, z-score = -3.37, R) >droSec1.super_0 2576300 91 - 21120651 CAUCGAUCGUAUAGAUCCGAGCAUAGAUCGCUUAUAUGGGGUCUAUAUGGUC------------GGUGGAGUGAUAAGCCCUGCUUUUCUGCUUUUGGCAUGC ((((((((((((((((((((((.......)))).....))))))))))))))------------)))).........(((..((......))....))).... ( -35.40, z-score = -3.37, R) >droYak2.chr3L 10353932 103 - 24197627 GAUCGAUCGUAUAGAUCCAAGCAUAGAUCGCUUAUAUGGUCUCUAUAUGGUCGAUGAUGGUGGUGGUGGAGUGAUAAGCCCUGCUUUUCUGCUUUUGGCAUGC .((((((((((((((.((((((.......)))....)))..))))))))))))))((.((..(.(((..(....)..))))..))..))(((.....)))... ( -33.10, z-score = -1.62, R) >droEre2.scaffold_4784 10358200 87 - 25762168 ----GAUCGUAUAGAUCCGAGCAUAGAUCGCUUAUAUGGUCUCUAUAUGGUC------------GGCGGAGUGAUAAGCCCUGCUUUUCUGCUUUUGGCAUGC ----(((((((((((.((((((.......))))....))..)))))))))))------------(((((.((.....)).)))))....(((.....)))... ( -25.30, z-score = -0.63, R) >droAna3.scaffold_13337 15278085 83 - 23293914 --UGGAUUGCUUCGAUCGGGGC---GAUCGCUUAUAUGGUGGCUAGGCACUGG--------GGUUGCCGGCUGAUAAGCCCUGGCUUUUGGCUCGC------- --..(((((((((....)))))---)))).........(((((((((..(..(--------((((...........)))))..)..)))))).)))------- ( -29.90, z-score = -0.40, R) >consensus CAUCGAUCGUAUAGAUCCGAGCAUAGAUCGCUUAUAUGGUGUCUAUAUGGUC____________GGUGGAGUGAUAAGCCCUGCUUUUCUGCUUUUGGCAUGC ....((((((((((((((((((.......))))....)).)))))))))))).............((((((....((((...))))))))))........... (-16.89 = -16.57 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:02 2011