| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,361,477 – 10,361,609 |
| Length | 132 |
| Max. P | 0.993123 |
| Location | 10,361,477 – 10,361,571 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 83.51 |
| Shannon entropy | 0.25716 |
| G+C content | 0.39522 |
| Mean single sequence MFE | -27.58 |
| Consensus MFE | -17.24 |
| Energy contribution | -16.68 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.82 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956105 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10361477 94 + 24543557 UAAAGCU--AGCUCUUUCAUUUUAAUAAUGAGGC---AAGUGGAAAAGUUGG-CUGAUGAAAUCGGAUGUCAGCUAACGGACCACUAAAUAUUUGCUGGU ....(((--(((..(((((((.....))))))).---.(((((....(((((-(((((..........))))))))))...)))))........)))))) ( -30.80, z-score = -4.11, R) >droSec1.super_0 2574195 96 + 21120651 CAAAGCUCUAGCCUUUUCAUUUCAAUAAUGAGGA---AAGUGGAGAAGUUGA-CUGAUAAAAUCGGAUGUCAGCUAACGGACCACUAAAUGUUUGCUGGU .......(((((.((((((((.....))))))))---.(((((....((((.-((((((........)))))).))))...)))))........))))). ( -25.30, z-score = -1.93, R) >droYak2.chr3L 10351958 97 + 24197627 CAAAGCC--AGCUCUUUCAUUUCAAUGAAGAGGAGGAAAGUGGUAAAGUUGG-CUGAUAAAAUCGUGUGUUAGCUAACGGACUACUAAAUGUUUGCUGGU ....(((--(((((((((.((((...)))).)))))).((((((...(((((-((((((........)))))))))))..))))))........)))))) ( -35.60, z-score = -5.22, R) >droEre2.scaffold_4784 10356221 95 + 25762168 CGAAGCU--GGCUCUUUCAUUUCAAUAUUGAGGA---AAGUAGAGAAGUUGGGCUGAUAAAAUCGGAUGUUUGCUAACGGACUAUUAAAUGUUUGGUGGC .....(.--.((((((((.((((........)))---).).)))).)))..).(((((...)))))......((((.(((((........))))).)))) ( -18.60, z-score = -0.01, R) >consensus CAAAGCU__AGCUCUUUCAUUUCAAUAAUGAGGA___AAGUGGAAAAGUUGG_CUGAUAAAAUCGGAUGUCAGCUAACGGACCACUAAAUGUUUGCUGGU ....(((..(((..(((((((.....))))))).....(((((....(((((.((((((........)))))))))))...)))))........)))))) (-17.24 = -16.68 + -0.56)
| Location | 10,361,507 – 10,361,609 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 86.44 |
| Shannon entropy | 0.21395 |
| G+C content | 0.37194 |
| Mean single sequence MFE | -30.38 |
| Consensus MFE | -20.85 |
| Energy contribution | -21.47 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.26 |
| Mean z-score | -3.46 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.59 |
| SVM RNA-class probability | 0.993123 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10361507 102 + 24543557 GCAAGUGGAAAAGUUGG-CUGAUGAAAUCGGAUGUCAGCUAACGGACCACUAAAUAUUUGCUGGUGUGAGGUUUUUUUCUUUUAUCAGUAAAUAGUUUCCUAA ...(((((....(((((-(((((..........))))))))))...)))))...((((((((((((.((((......)))).))))))))))))......... ( -35.70, z-score = -4.92, R) >droSec1.super_0 2574227 101 + 21120651 GAAAGUGGAGAAGUUGA-CUGAUAAAAUCGGAUGUCAGCUAACGGACCACUAAAUGUUUGCUGGUGUGAGGCUUUUU-CUUUUAUCAGUAAAUAGUUUCUUAA ((((((((....((((.-((((((........)))))).))))...)))))...((((((((((((.((((.....)-))).))))))))))))..))).... ( -29.90, z-score = -3.24, R) >droYak2.chr3L 10351991 101 + 24197627 GAAAGUGGUAAAGUUGG-CUGAUAAAAUCGUGUGUUAGCUAACGGACUACUAAAUGUUUGCUGGUGUGAGGUUUUUG-GGUUUAUCGGUUAAUAGUUUCCCAA ...((((((...(((((-((((((........)))))))))))..)))))).....((..(....)..))....(((-((.((((......))))...))))) ( -26.90, z-score = -2.45, R) >droEre2.scaffold_4784 10356251 102 + 25762168 GAAAGUAGAGAAGUUGGGCUGAUAAAAUCGGAUGUUUGCUAACGGACUAUUAAAUGUUUGGUGGCGUGAGGUUUUUU-GUUUUAUCAGCUAAUAGUUUCCUAA .....(((..((.(..((((((((((((.((((.(((((((.(((((........))))).))))).)).))))...-))))))))))))...).))..))). ( -29.00, z-score = -3.22, R) >consensus GAAAGUGGAAAAGUUGG_CUGAUAAAAUCGGAUGUCAGCUAACGGACCACUAAAUGUUUGCUGGUGUGAGGUUUUUU_CUUUUAUCAGUAAAUAGUUUCCUAA ...(((((....(((((.((((((........)))))))))))...)))))...((((((((((((.(((........))).))))))))))))......... (-20.85 = -21.47 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:01 2011