| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,760,618 – 4,760,712 |
| Length | 94 |
| Max. P | 0.507845 |
| Location | 4,760,618 – 4,760,712 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 82.54 |
| Shannon entropy | 0.30473 |
| G+C content | 0.51826 |
| Mean single sequence MFE | -25.76 |
| Consensus MFE | -11.86 |
| Energy contribution | -13.46 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.507845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4760618 94 + 23011544 -GAGUGGAGCGAACAAAGUGUAACCUUAACACACGCGGCUGAAAAGUCGAAAGACUUUUUUCUACCACCCCUUUGCACUAACCCCCAUUUAACGC---- -((((((.(((......((((.......)))).)))((..((((((((....))))))))....))..................)))))).....---- ( -22.40, z-score = -2.59, R) >droSim1.chr2L 4629938 93 + 22036055 GGAGUGGAGCGAACAAAGUGUAACCUUAACACACGCGGCUGAAAAGUCGAAGGACUCUC--CCACCACCCCCUUGCACCAACCCCCUUUUAACGC---- ((..(((.((((.....((((.......))))...(((((....)))))..((......--)).........)))).)))..))...........---- ( -21.40, z-score = -0.92, R) >droSec1.super_5 2857011 93 + 5866729 GGAGUGGAGCGAACAAAGUGUAACCUUAACACACGCGGCUGAAAAGUCGAAGGACUUUU--CCACCGCCCCCUUGCACCAACCCCCUUUUAACGC---- ((..(((.((((.....((((.......))))..((((..((((((((....)))))))--)..))))....)))).)))..))...........---- ( -32.70, z-score = -4.40, R) >droYak2.chr2L 4768497 95 + 22324452 -GAGUGGAGCGAACAAAGUGUAACCUUAACACACGCGGCUGUAAAGGCGAAGGACUUUUC-C--ACCCCCCUUUACACCACCACCCCUCUUUUGUGCAC -..((((.(((......((((.......)))).)))((.((((((((.(..(((....))-)--...).)))))))))).))))............... ( -23.70, z-score = -1.25, R) >droEre2.scaffold_4929 4836076 92 + 26641161 -GAGUGGAGCGAACAAAGUGUAACCUUAACACACGCGGCUGAAAAGGCGAAGGACUUUUC-CGAACCCCCCUUU---UCAGCACCCACUUUUUGCAC-- -((((((.(((......((((.......)))).))).((((((((((....(((....))-).......)))))---)))))..)))))).......-- ( -28.60, z-score = -2.95, R) >consensus _GAGUGGAGCGAACAAAGUGUAACCUUAACACACGCGGCUGAAAAGUCGAAGGACUUUU__CCACCACCCCUUUGCACCAACCCCCAUUUAACGC____ ....(((.((((.....((((.......))))........((((((((....))))))))............)))).)))................... (-11.86 = -13.46 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:22 2011