| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,352,163 – 10,352,257 |
| Length | 94 |
| Max. P | 0.854249 |
| Location | 10,352,163 – 10,352,257 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 79.26 |
| Shannon entropy | 0.38332 |
| G+C content | 0.45349 |
| Mean single sequence MFE | -28.15 |
| Consensus MFE | -18.09 |
| Energy contribution | -17.82 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10352163 94 - 24543557 UGC--GUUGGCAACAUUUGUAUGCAAAUUGC-UUUUGGCGAGUGCAU--GUGCAACAUGUUGCCUUUGUG------GUUCCACAGAGUUCCUCUUCCAAUUCUUU .(.--((((((((((((((((((((..((((-.....)))).)))))--..)))).)))))))(((((((------....))))))).........)))).)... ( -29.30, z-score = -2.14, R) >droSim1.chr3L 9741761 94 - 22553184 UGC--GUUGGCAACAUUUGUAUGCAAAUUGC-UUUUGGCGAGUGCAU--GUGCAACAUGUUGCCUUUGUG------GUUCCACCGAGUUCCUCUUCCAAUUCUUC .((--(..(((((((((((((((((..((((-.....)))).)))))--..)))).))))))))..)))(------(.....))(((((........)))))... ( -28.50, z-score = -2.21, R) >droSec1.super_0 2565303 94 - 21120651 UGC--GUUGGCAACAUUUGUAUGCAAAUUGC-UUUUGCCGAGUGCAU--GUGCAACAUGUUGCCUUUGUG------GUUCCACCGAGUUCCUCUUCCAAUUCUUU .((--(..(((((((((((((((((....((-....))....)))))--..)))).))))))))..)))(------(.....))(((((........)))))... ( -27.30, z-score = -2.27, R) >droYak2.chr3L 10341942 100 - 24197627 UGC--GUUGGCAACAUUUGUAUGCAAAUUGC-UUUUGGCGAGUGCAU--GUGCAACAUGUUGCCUUUGUGGUUCUGGUUGCACAGUGUUCCUCUUCCAAUUCUUU .((--(..(((((((((((((((((..((((-.....)))).)))))--..)))).))))))))..)))((..(((......)))....)).............. ( -30.00, z-score = -1.35, R) >droEre2.scaffold_4784 10346237 99 - 25762168 UGC--GUUGGCAACAUUUGUAUGCAAAUUGCUUUUUGCCGAGUGCAU--GUGCAACAUGUUGCCUUUGUGGU--UCGUUCCACAGUGUGUCUCUUCCAAUUCUUU ...--...(((((((((((((((((....((.....))....)))))--..)))).)))))))).((((((.--.....)))))).................... ( -28.40, z-score = -1.90, R) >droMoj3.scaffold_6680 4133547 81 + 24764193 UGCCACACGGCAACAUUUGUAUGCAAAUUG--CCUGGGCGACUGCACGAGUACAACAUGUUGCUGCCGUAC---CAGUUGCUUUCA------------------- ..(((...((((..(((((....)))))))--)))))(((((((.(((.((((((....))).))))))..---))))))).....------------------- ( -25.40, z-score = -0.83, R) >consensus UGC__GUUGGCAACAUUUGUAUGCAAAUUGC_UUUUGGCGAGUGCAU__GUGCAACAUGUUGCCUUUGUG______GUUCCACAGAGUUCCUCUUCCAAUUCUUU ........(((((((((((((((((..(((........))).))))....))))).))))))))......................................... (-18.09 = -17.82 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:57 2011