| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,346,547 – 10,346,602 |
| Length | 55 |
| Max. P | 0.720772 |
| Location | 10,346,547 – 10,346,602 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 91.34 |
| Shannon entropy | 0.14670 |
| G+C content | 0.57253 |
| Mean single sequence MFE | -19.90 |
| Consensus MFE | -18.02 |
| Energy contribution | -18.18 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10346547 55 - 24543557 -GGGUUCGAGGGGCAAGAGGGCGUGGCAGGCAUGCACAGCUUCUAUCAAUGAGCUA -.((((((((((((......(((((.....)))))...)))))).....)))))). ( -15.50, z-score = -0.60, R) >droSim1.chr3L 9736214 55 - 22553184 -GGGUUCGAGGGGCAAGAGGGCGUGGCAGCCAUGCCCAGCUUCUAUCAAUGAGCUA -.((((((((((((....((((((((...)))))))).)))))).....)))))). ( -23.40, z-score = -1.96, R) >droSec1.super_0 2559839 55 - 21120651 -GGGUUCAAGGGGCAAGAGGUCGUGGCAGCCAUGCACAGCUUCUAUCAAUGAGCUA -.((((((..((...((((((.(((.((....))))).)))))).))..)))))). ( -17.90, z-score = -1.46, R) >droYak2.chr3L 10336296 55 - 24197627 -GGGUUCGAGGGGCAAGUGGGUGUGGCAGCCAUGCCCAGCUUCUAUCAAUGAGCUA -.((((((((((((...(((((((((...))))))))))))))).....)))))). ( -22.50, z-score = -1.71, R) >droEre2.scaffold_4784 10340543 56 - 25762168 GGGUUUCAAGGAGCGAGUGGGUGUGGCAGCCAUGCCCAGCUUCUAUCAAUGAGCUA .((((.((((((((...(((((((((...))))))))))))))).....)))))). ( -20.20, z-score = -1.15, R) >consensus _GGGUUCGAGGGGCAAGAGGGCGUGGCAGCCAUGCCCAGCUUCUAUCAAUGAGCUA ..((((((((((((....(((((((.....))))))).)))))).....)))))). (-18.02 = -18.18 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:56 2011