| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,311,464 – 10,311,555 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 10,311,464 – 10,311,555 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 67.92 |
| Shannon entropy | 0.56497 |
| G+C content | 0.56921 |
| Mean single sequence MFE | -27.24 |
| Consensus MFE | -12.63 |
| Energy contribution | -12.61 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 10311464 91 - 24543557 AGUGAUGG-CCCCUUGUGCCCCCUCUCUCCCACCCAAAAUUGGUGGCAGCUGCUUCUG--------UUCCUCGUGGGCCAUAACGGCGCCAUAACUUUGU---- (((.((((-(((.((((((((.(......(((((.......)))))(((......)))--------......).))).))))).)).))))).)))....---- ( -28.40, z-score = -1.52, R) >droSim1.chr3L 9701508 82 - 22553184 AGUGAUGC-AACCUUGUGCCCCC---------ACCGAAAUCGGUGGCAGCUGCUUCUG--------UUCCUCGUGGGCCAUAACGGCGCCAUAACUUUGG---- .(((.(((-.....((.((((((---------((((....))))))(((......)))--------........)))))).....))).)))........---- ( -24.70, z-score = -0.24, R) >droSec1.super_0 2525354 80 - 21120651 AGUGAUG----CCUUGUGCCCCCC--------ACCAAAAUCGGUGGCAGCUGCUUCUG--------UUCUUCGUGGGCCAUAACGGCGCCAUAACUUUGG---- .(((.((----(((((((...(((--------((......(((.(((....))).)))--------......))))).))))).)))).)))........---- ( -25.00, z-score = -0.69, R) >droYak2.chr3L 10300714 83 - 24197627 AGUGAUGGACGCCUUGCGCCUCC---------CGAAAAGACGGUGGCAGCUGCUUCUG--------UUCCUCGUGGGCCAUAACGGCGCCAUAACUUUGG---- (((.((((.((((.((.((((..---------(((...(((((.(((....))).)))--------))..))).))))))....)))))))).)))....---- ( -30.20, z-score = -1.22, R) >droEre2.scaffold_4784 10304752 83 - 25762168 AGUGAUGCACCACUUGCGCCUCC---------CCAAAUGACGGUGGCAGCUGCUUCUG--------UUCCUCGUGGGCCAUAACGGCGCCAUAACUUUGG---- ((((......)))).(((((..(---------(((...(((((.(((....))).)))--------)).....)))).......)))))...........---- ( -23.20, z-score = 0.48, R) >droAna3.scaffold_13337 15231988 72 - 23293914 -----------AAUUUUUUCUUA---------CCAUUAAUCGGUGGCAGCUGCUACCG--------CUCCUUGUGGGCCAUAACGGCGCCACAACAUCAG---- -----------............---------........(((((((....)))))))--------....(((((((((.....))).))))))......---- ( -23.90, z-score = -3.46, R) >droPer1.super_27 1145020 92 - 1201981 ------------CCUGAAGCUCCCUGGCUUCCCUUUUGGACUGCAGCUGCUGCUGCUGUGGCUGGCUGCCUCCUUGGCCAUAAUGGCGCCAUAACUUUGGGCCC ------------((..(((.....((((.........(((..((((((((..(....)..)).)))))).)))...(((.....)))))))...)))..))... ( -35.30, z-score = -1.29, R) >consensus AGUGAUG____CCUUGUGCCUCC_________CCAAAAAUCGGUGGCAGCUGCUUCUG________UUCCUCGUGGGCCAUAACGGCGCCAUAACUUUGG____ ........................................(((.(((....))).)))..............(((((((.....))).))))............ (-12.63 = -12.61 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:51 2011