| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,305,603 – 10,305,699 |
| Length | 96 |
| Max. P | 0.880576 |
| Location | 10,305,603 – 10,305,699 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 75.45 |
| Shannon entropy | 0.40964 |
| G+C content | 0.35558 |
| Mean single sequence MFE | -21.55 |
| Consensus MFE | -17.59 |
| Energy contribution | -18.78 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.880576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10305603 96 - 24543557 UGUCGUGUGUUUGAGUUUGAAAUAUUUGCAAUUGCGAAUCCUGUCGUAUUUGUCACAGGAUGUACAUAUAUAUACACUCAAAUAU-U-CCCAUCCAUA------ ....(.((((((((((.((......((((....))))(((((((.(.......))))))))...........)).))))))))))-.-).........------ ( -20.10, z-score = -1.12, R) >droEre2.scaffold_4784 10298742 95 - 25762168 UGUCGUGUGUUUGAGUUUGAAAUAUUUGCAAUUGCGAGUCCUGUCGUAUUUGUCACAGGAAGUACA--UAUAUACAUUCAAAUAU-UCCCCAUCUAUG------ ((..(.((((((((((.((.....(((((....)))))((((((.(.......)))))))......--....)).))))))))))-.)..))......------ ( -18.00, z-score = -0.75, R) >droAna3.scaffold_13337 15226673 101 - 23293914 UGUCGUGUGUUUGAGUUUGAAAUAUUUGCAAUUGCGAAUCCUGUCGUAUUUGUCACAGGACACAUACACAAACAAAAGUAUAUAUAUAUAUAUUCCUUGUA--- ((((.((((..(((((.(((...((((((....))))))....))).))))).)))).)))).........((((.(((((((....)))))))..)))).--- ( -22.70, z-score = -1.43, R) >droMoj3.scaffold_6680 4078027 104 + 24764193 CAUCGUGUGUUUGAGUUUGAAAUAUUCGCAAUUGCGAAUCCCGACGUAUUUGUCACAGGAUACACACACAGAUAGACGCACACACAUUAUGGUACAUAUACAUG (((.((((((.((.(((((......((((....))))((((.((((....))))...))))...........))))).)).)))))).)))............. ( -25.40, z-score = -1.44, R) >consensus UGUCGUGUGUUUGAGUUUGAAAUAUUUGCAAUUGCGAAUCCUGUCGUAUUUGUCACAGGAUACACACACAUAUACACGCAAAUAU_U_CCCAUCCAUA______ ....(((((((((((((((.....(((((....)))))(((((............)))))............)))))))))))))))................. (-17.59 = -18.78 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:47 2011