| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,751,334 – 4,751,447 |
| Length | 113 |
| Max. P | 0.762144 |
| Location | 4,751,334 – 4,751,447 |
|---|---|
| Length | 113 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 71.92 |
| Shannon entropy | 0.58202 |
| G+C content | 0.35817 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -10.01 |
| Energy contribution | -11.40 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.762144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4751334 113 - 23011544 UUACACUGAAGAUGUGAAACAGAAUUUCAAAUGUUGACACUGUAAUUGGUCACAUUUGAGAGCUUUGAGCACCUGGAAAGCUGUUCAAAUGCAUAGCAACUGUUAAUUAAAAC ...(((.......))).(((((..((((((((((.(((.(.......))))))))))))))((((((((((.((....)).)))))))).)).......)))))......... ( -32.90, z-score = -3.41, R) >droAna3.scaffold_12943 1953494 106 + 5039921 -----CCCAGGACG--AAAUCGAGUUUCCCAUGUUGACACUGUAAUUGGAGCCAUUUGAAAGUCUUGUGCAUUUGCAUUGCAAUUCAAAAGCUAUGCAUCUGUUAAUUAAAAC -----..((((((.--...((((((((((...((((......)))).))))..))))))..)))))).(((..(((((.((.........)).)))))..))).......... ( -21.90, z-score = -0.42, R) >droEre2.scaffold_4929 4826909 113 - 26641161 UUACACUAAAGAUGUAAAACAGAAUUUCAAAUGUUGACACUGUAAUUGGUCACAUUUGAGAACUUUGAGGACUUGCAAAGCUCUUCAAAGGCAUAGCAACUGUUAAUUAAAAC ((((((....).)))))(((((..((((((((((.(((.(.......)))))))))))))).(((((((((((.....)).))))))))).........)))))......... ( -29.30, z-score = -3.26, R) >droYak2.chr2L 4759260 113 - 22324452 UUACACCGAAGAUGUGAAACAGAAUUUCGAAUGUUGACACUGUAAUUGGUCUCAUUUGAGAGCUCUGAGCACUUACAAAGCUGCUCAAAUGCAUAGCAACUGUUUAUUAAAAC ...(((.......)))((((((..(((((((((..(((.(.......)))).)))))))))((..((((((((.....)).))))))...)).......))))))........ ( -27.60, z-score = -1.82, R) >droSec1.super_5 2827904 113 - 5866729 UUACACUGAAGAUGUGAAACAGAAUUCCAAAUGUUGACACUGUAAUUGGUCACAUUUGAGAGCUUUGAGCACCUGCAAAGCUGUUCAAAUGCAUAGCAAUUGUUAAUUAAAAC ...(((.......))).(((((...(((((((((.(((.(.......))))))))))).))((((((((((.((....)).)))))))).)).......)))))......... ( -26.40, z-score = -1.29, R) >droSim1.chr2L 4619739 113 - 22036055 UUACACUGAAGUUGUGAAACAGAAUUCCAAAUGUUGACACUGUAAUUGGUCACAUUUGAGAGCUUUGAGCACCUGCAAAGCUGUUCAAAUGCAUAGCAACUGUUAAUUAAAAC ...(((.......))).(((((...(((((((((.(((.(.......))))))))))).))((((((((((.((....)).)))))))).)).......)))))......... ( -28.90, z-score = -1.81, R) >droGri2.scaffold_15126 3297239 97 + 8399593 ---------AUAUGUUGAAUAUGUUCCU---UGUCAACAUGAUG--UAAAUAUG-UUGUUGCUUUGAAGUACUUGCCGGCGUUUCCCCAAGUGUGCUGGAAUUUAAUUUAAA- ---------.....((((((..(((((.---...(((((((...--....))))-))).........(((((.....((......)).....))))))))))...)))))).- ( -16.40, z-score = -0.27, R) >consensus UUACACUGAAGAUGUGAAACAGAAUUUCAAAUGUUGACACUGUAAUUGGUCACAUUUGAGAGCUUUGAGCACUUGCAAAGCUGUUCAAAUGCAUAGCAACUGUUAAUUAAAAC .................(((((.....(((((((.(((.(.......)))))))))))...((((((((((.((....)).)))))))).)).......)))))......... (-10.01 = -11.40 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:21 2011