| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,299,580 – 10,299,670 |
| Length | 90 |
| Max. P | 0.973621 |
| Location | 10,299,580 – 10,299,670 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 83.26 |
| Shannon entropy | 0.30384 |
| G+C content | 0.52538 |
| Mean single sequence MFE | -31.70 |
| Consensus MFE | -24.06 |
| Energy contribution | -24.34 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.973621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10299580 90 + 24543557 GCAGCGCUGCCAGCGUCACACACUUGACGUUUCUCCCUCAAUACCA-UAGUAU----------UUUUGGGGGUGGCAAUAUGGACUUCCAGUUGUGCGACU (((((((..(((((((((......)))))))...(((..(((((..-..))))----------)...)))))..))....(((....))))))))...... ( -31.40, z-score = -2.56, R) >droSim1.chr3L 9689217 89 + 22553184 GCAGCGCUGCCAGCGUCACACACUUGACGUUUCUCCCUCAAUACCA-UAGUAU----------UUU-GGGGGUGGCAAUAUGGACUUCCAGUUGUGCGGCU ((.(((((((((((((((......))))))..(((((..(((((..-..))))----------)..-))))))))))...(((....)))...)))).)). ( -34.70, z-score = -3.06, R) >droSec1.super_0 2513467 89 + 21120651 GCAGCGCUGCCAGCGUCACACACUUGACGUUUCUCCCUCAAUAUCA-UAGUAU----------UUU-GGGGGUGGCAAUAUGGACUUCCAGUUGUGUGGCU ((.(((((((((((((((......))))))..(((((..(((((..-..))))----------)..-))))))))))...(((....)))...)))).)). ( -31.50, z-score = -2.25, R) >droYak2.chr3L 10288200 100 + 24197627 GCAGCGCUGCCAGCGUCACACACUUGACGUUUCUCCCUCAAUAAUA-CUAUAUCGUGUAUAUUUUUUGGGGGUGGCAAUAUGGACUUCCAGUUGUGCGCCU ...(((((((((((((((......))))))....(((((((..(((-(........)))).....))))))))))))...(((....))).....)))).. ( -33.30, z-score = -2.71, R) >droEre2.scaffold_4784 10292641 91 + 25762168 GCAGCGCUGCCAGCGUCACACACUUGACGUUUCUCCCUCAAUACUACUAGUAU----------UUUUGGGGGUGGCAAUACGGACUUCCAGUUGUGCGCCU ...(((((((((((((((......))))))..(((((..(((((.....))))----------)...))))))))))....((....))......)))).. ( -32.30, z-score = -2.71, R) >droAna3.scaffold_13337 15220846 80 + 23293914 GCAGCGCUGCCGACGCCGCAC--UUGACGUUUC--CCUCAAAAACG------C----------UUUUGGGGGUGGCAUU-CGGCCAUCCAGCAGUACGUCU ((.((((....).))).))..--..(((((..(--((((((((...------.----------)))))))))((((...-..)))).........))))). ( -27.00, z-score = -0.63, R) >consensus GCAGCGCUGCCAGCGUCACACACUUGACGUUUCUCCCUCAAUACCA_UAGUAU__________UUUUGGGGGUGGCAAUAUGGACUUCCAGUUGUGCGCCU (((((..(((((((((((......))))))....(((((((........................))))))))))))....((....)).)))))...... (-24.06 = -24.34 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:45 2011