| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,284,353 – 10,284,446 |
| Length | 93 |
| Max. P | 0.873914 |
| Location | 10,284,353 – 10,284,446 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 91.83 |
| Shannon entropy | 0.14796 |
| G+C content | 0.51840 |
| Mean single sequence MFE | -29.96 |
| Consensus MFE | -24.65 |
| Energy contribution | -24.05 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.873914 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10284353 93 + 24543557 GCAUUCAUUGAAAUCUAUUUCCUACAUUUUUCUCCGUGCC-UGUGU-----GCCAUUCUUUU-GCCGGGUGCGGAAAUGUGGGCCGCGCUCUCUUGCGGC .....................(((((((....((((..((-((.((-----...........-))))))..)))))))))))((((((......)))))) ( -31.00, z-score = -2.60, R) >droSim1.chr3L 9673965 99 + 22553184 GCAUUCAUUGAAAUCUAUUUCCUAUAUUUUUCUCCGUGCCCUGUGUUCACUGCCAUUCUUUU-GCCGGGUGCGGAAAAGUGGGCCGCGCUCUCUUGCGGC ....(((((((((..(((.....)))..))))((((..(((.(((................)-)).)))..))))..)))))((((((......)))))) ( -28.19, z-score = -1.52, R) >droSec1.super_0 2498462 99 + 21120651 GCAUUCAUUGUAAUCUAUUUCCUACAUUUUUCUCCGUGCCCUGUGUUCACUCCCAUUCUUUU-GCCGGGUGCGGAAAAGUGGGCCGCGCUCUCUUGCGGC (((.....))).............((((((..((((..(((.(((................)-)).)))..)))))))))).((((((......)))))) ( -28.39, z-score = -2.17, R) >droYak2.chr3L 10272780 99 + 24197627 GCACUCAUCGAAAUCUAUUUCCUACAUUUUUCUCCGUGCC-CGUGCUGGCUUCCAUUCUUUUUGCCGGGUGCGGAAAAGUGGGCCGCGCUCUCUUGCGGC ........................((((((..((((..((-((.((.................))))))..)))))))))).((((((......)))))) ( -32.43, z-score = -2.06, R) >droEre2.scaffold_4784 10277544 98 + 25762168 GCAUUCAUUGAAAUCUAUUUCCUACAUUUUUCUCCGUGCC-CGUGCUCACUACCAUUCUUUU-GUCGGGUGCGGAAAAGUGGGCCGCGCUCUCUUGCGGC ........................((((((..((((..((-((.((................-))))))..)))))))))).((((((......)))))) ( -29.79, z-score = -2.45, R) >consensus GCAUUCAUUGAAAUCUAUUUCCUACAUUUUUCUCCGUGCC_UGUGUUCACUGCCAUUCUUUU_GCCGGGUGCGGAAAAGUGGGCCGCGCUCUCUUGCGGC ........................((((((..((((..((.((.((.................))))))..)))))))))).((((((......)))))) (-24.65 = -24.05 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:40 2011