| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,280,509 – 10,280,601 |
| Length | 92 |
| Max. P | 0.963089 |
| Location | 10,280,509 – 10,280,601 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 82.02 |
| Shannon entropy | 0.38283 |
| G+C content | 0.48606 |
| Mean single sequence MFE | -31.52 |
| Consensus MFE | -22.09 |
| Energy contribution | -22.11 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.963089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10280509 92 - 24543557 ----------CAUCA-ACCGCACU---GAGUUGCCAGUGCCAACGGAAAAUGUCUUCGGUUUGAGUGCUUUUCCGGGGAAAAUGUAAUUUUCUCAUGGCAG-CCAAC ----------.....-.......(---(.(((((((.......(((((((.((.(((.....))).)))))))))((((((((...)))))))).))))))-))).. ( -27.50, z-score = -1.47, R) >droSim1.chr3L 9669762 92 - 22553184 ----------CAUCA-ACCGCACU---GAGUUGCCAGUGCCAACGGAAAAUGUCUUCGGGUUGAGUGCUUUUCCGGGGAAAAUGUAAUUUUCUCAUGGCAG-CCAAC ----------..(((-((((((((---(......))))))...((((.......))))))))))(.(((...(((((((((((...)))))))).))).))-))... ( -29.40, z-score = -1.76, R) >droSec1.super_0 2494715 92 - 21120651 ----------CAUCA-ACCGCACU---GAGAUGCCAGUGCCAACGGAAAAUGUCUUCGGGUUGAGUGCUUUUCCGGGGAAAAUGUAAUUUUCUCAUGGCAG-CCAAC ----------..(((-((((((((---(......))))))...((((.......))))))))))(.(((...(((((((((((...)))))))).))).))-))... ( -29.40, z-score = -1.79, R) >droYak2.chr3L 10268765 92 - 24197627 ----------CAUCA-ACCGCACU---GAGUUGCCAGUGCCAACGGAAAAUGUCUUCGGGUUGAGUGCUUUUCCGGGGAAAAUGUAAUUUUCUCAUGGCAU-CCAAC ----------..(((-((((((((---(......))))))...((((.......))))))))))(((((......((((((((...))))))))..)))))-..... ( -28.60, z-score = -1.85, R) >droEre2.scaffold_4784 10273468 92 - 25762168 ----------CAUCA-ACCGCACU---GAGUUGCCAGUGCCAACGGAAAAUGUCUUCGGGUUGAGUGCUUUUCCGGGGAAAAUGUAAUUUUCUCAUGGCAU-CCAAC ----------..(((-((((((((---(......))))))...((((.......))))))))))(((((......((((((((...))))))))..)))))-..... ( -28.60, z-score = -1.85, R) >droAna3.scaffold_13337 15203514 94 - 23293914 ----------CAUCAGACCACACU---GAGUUGCCACUGCCAACGGAAAAUGUCUUCGGGUUGAGUGCUUUUCCGGGGAAAAUGUAAUUUUCUCAUGGCAGCCCAAC ----------..((((......))---))((((...((((((.(((((((.((.(((.....))).)))))))))((((((((...)))))))).))))))..)))) ( -30.50, z-score = -2.05, R) >dp4.chrXR_group6 8674570 93 - 13314419 -----------CUUGAACCACACU--GGAGUUGCCAGUGCCAACGGAAAAUGUCUUCGGGUUGAGUGCUUUUCCGGAGAAAAUGUAAUUUUCUCAUGGCAGGCAAC- -----------......((.....--)).((((((..(((((.(((((((.((.(((.....))).)))))))))((((((((...)))))))).)))))))))))- ( -33.20, z-score = -2.99, R) >droPer1.super_12493 100 92 - 661 -----------CUUGAACCACACU--GGAGUUGCCAGUGCCAACGGCGAAUGUCUUCGGCUUGAGUGC-UUUAUGGAGAGCAUGUAACUAUCUCAUGGCAUGCUAC- -----------......(((((((--.((((((((.((....)))))(((....)))))))).)))).-....)))..(((((((............)))))))..- ( -24.40, z-score = 0.15, R) >droWil1.scaffold_181024 1420712 106 + 1751709 CUUCUUCUGGUUUUUUUUUGCGCUGCUGAGUUGCCAGUGCCAACGGAAAAUGUCUUCGGGUUGAGUGCUUUUCCGGAGAAAAUGUAAUUUUCUCAUGGCAG-GCAGC .............................((((((..(((((.(((((((.((.(((.....))).)))))))))((((((((...)))))))).))))))-))))) ( -32.10, z-score = -1.10, R) >droVir3.scaffold_13049 16060477 103 - 25233164 --GAAUGCAGAGCCCGCUCUCAGU-UGGCGUUGCCACUGCCAACGGAAAAUGUCUUCGGGUUGAGUGCUUUUCCGGAGAAAAUGUAAUUUUCUCAUGGCAG-UCAAC --....((((.(((.((.....))-.))).)))).(((((((.(((((((.((.(((.....))).)))))))))((((((((...)))))))).))))))-).... ( -37.50, z-score = -2.91, R) >droMoj3.scaffold_6680 4050798 103 + 24764193 --GAAGGCAGAGCCCGCUCUCAGU-UGGCGUUGCCACUGCCAACGGAAAAUGUCUUCGGGUUGAGUGCUUUUCCGGAGAAAAUGUAAUUUUCUCAUGGCAG-UCAUC --...(((((.(((.((.....))-.))).)))))(((((((.(((((((.((.(((.....))).)))))))))((((((((...)))))))).))))))-).... ( -41.90, z-score = -3.94, R) >droGri2.scaffold_15110 11960841 99 + 24565398 ------ACAACAGCCGCUCUCAGU-UGGCGUUGCCACUGCCAACGGAAGAUGUCUUCGGGUUGAGUGCUUUUCCGGAGAAAAUGUAAUUUUCUCAUGGCAG-UCAUC ------.((((.(((((.....).-))))))))..(((((((.(((((((.((.(((.....))).)))))))))((((((((...)))))))).))))))-).... ( -35.20, z-score = -2.76, R) >consensus __________CAUCA_ACCGCACU___GAGUUGCCAGUGCCAACGGAAAAUGUCUUCGGGUUGAGUGCUUUUCCGGAGAAAAUGUAAUUUUCUCAUGGCAG_CCAAC .....................................(((((.(((((((.((.(((.....))).)))))))))((((((((...)))))))).)))))....... (-22.09 = -22.11 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:35 2011