| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,275,519 – 10,275,613 |
| Length | 94 |
| Max. P | 0.998596 |
| Location | 10,275,519 – 10,275,613 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 78.41 |
| Shannon entropy | 0.44892 |
| G+C content | 0.47530 |
| Mean single sequence MFE | -30.33 |
| Consensus MFE | -21.62 |
| Energy contribution | -23.93 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.41 |
| SVM RNA-class probability | 0.998596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10275519 94 - 24543557 CCCGAAAAUUUUGUAGGCUGCACGCACGCGGUCUCAUUAUUGGGUCAACAAACUGGCUCGAUGAUGGAUCGAUUGCGUAUGCCAUUAAGUCUAC ............((((((((((((((..(((((.(((((((((((((......))))))))))))))))))..)))))..)).....))))))) ( -37.30, z-score = -4.67, R) >droAna3.scaffold_13337 15198189 93 - 23293914 ACCGAAAAUUAAGUACGCCG-AUGCACGCGCUCUCAUUACCAGGUCCACAAACUGGCUCGAUGAUGGAUCGAUUCCAUAUAACAUUAAGUAUAU ............((((((((-.....)).))..(((((.((((.........))))...)))))((((.....))))...........)))).. ( -15.50, z-score = 0.42, R) >droEre2.scaffold_4784 10267669 93 - 25762168 CCCGAAAAUUAAGUAGGCUGCACGCACGCGGUCUCAUUAUUGGGUCGGCAAACUGGCUCCAUGAUGGAUC-AUUGCGUAUGCCAUUUAGUCUAC .......(((((((.(((...(((((...((((.((((((.(((((((....))))))).))))))))))-..)))))..)))))))))).... ( -32.80, z-score = -2.83, R) >droYak2.chr3L 10263817 94 - 24197627 CCCGAAAAUUAAGUAGGCUGCACGCACGCGGUCUCAUUAUUGGGUCAGCAAACUGGCUCCAUGAUGGAUCGAUUGCGUAUGCCAUUUAGUCUAC .......(((((((.(((...(((((..(((((.((((((.(((((((....))))))).)))))))))))..)))))..)))))))))).... ( -37.50, z-score = -4.39, R) >droSec1.super_0 2490045 94 - 21120651 CCCGAAAAUUAAGUAGGCUGCACGCACGCGGUCUCAUUAUUGGGUCAACAAACUGGCUCGAUGAUGGAUCGAUUGCGUAUGCCAUUAAGUCUAC ............((((((((((((((..(((((.(((((((((((((......))))))))))))))))))..)))))..)).....))))))) ( -37.50, z-score = -4.85, R) >droSim1.chr3L 9665009 94 - 22553184 ACCGAAAAUUAAGUAGGCUGCACGCACGCGGUCUCAUUAUUGGGUCAACAAACUGGCUCGAUGAUGGAUCGAUUGCGUAUGCCAUUAAGUCUAC ............((((((((((((((..(((((.(((((((((((((......))))))))))))))))))..)))))..)).....))))))) ( -37.50, z-score = -5.01, R) >droVir3.scaffold_13049 16056042 80 - 25233164 ACUGCAAAUU--GUAAAUUGCGCUUACACAA-CUCGCCACUUG-----CAACCUGUGUCACUGAUCGAAU-GUUGGCUGCCAGGUCCAG----- ..(((((...--(..(.(((.(....).)))-.)..)...)))-----))(((((.((..(..((.....-))..)..)))))))....----- ( -14.20, z-score = 1.22, R) >consensus CCCGAAAAUUAAGUAGGCUGCACGCACGCGGUCUCAUUAUUGGGUCAACAAACUGGCUCGAUGAUGGAUCGAUUGCGUAUGCCAUUAAGUCUAC ...............(((...(((((..(((((.(((((((((((((......))))))))))))))))))..)))))..)))........... (-21.62 = -23.93 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:34 2011