| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,260,058 – 10,260,109 |
| Length | 51 |
| Max. P | 0.708687 |
| Location | 10,260,058 – 10,260,109 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 96.08 |
| Shannon entropy | 0.05402 |
| G+C content | 0.41176 |
| Mean single sequence MFE | -12.97 |
| Consensus MFE | -11.00 |
| Energy contribution | -11.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.708687 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10260058 51 + 24543557 GAGCGCAUGAAGAGUUUGGAUACUUAUUUUAACCAGUUGUUAGAAAGCGCA ..((((.....((((......)))).(((((((.....))))))).)))). ( -12.90, z-score = -2.39, R) >droSec1.super_0 2474912 51 + 21120651 GAGCGCAUGGAGAGUUUGGAUCCUUAUUUUAACCAGUUGUUAGAAAGCGCA ..((((..(((.........)))...(((((((.....))))))).)))). ( -13.00, z-score = -1.81, R) >droSim1.chr3L 9649863 51 + 22553184 AAGCGCAUGGAGAGUUUGGAUCCUUAUUUUAACCAGUUGUUAGAAAGCGCA ..((((..(((.........)))...(((((((.....))))))).)))). ( -13.00, z-score = -1.86, R) >consensus GAGCGCAUGGAGAGUUUGGAUCCUUAUUUUAACCAGUUGUUAGAAAGCGCA ..((((.....(((........))).(((((((.....))))))).)))). (-11.00 = -11.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:32 2011