| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,251,115 – 10,251,211 |
| Length | 96 |
| Max. P | 0.630501 |
| Location | 10,251,115 – 10,251,211 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 83.18 |
| Shannon entropy | 0.33357 |
| G+C content | 0.51526 |
| Mean single sequence MFE | -34.62 |
| Consensus MFE | -18.17 |
| Energy contribution | -20.15 |
| Covariance contribution | 1.98 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630501 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10251115 96 - 24543557 GAAAGGGGCAAAUGCGCUAAAGGAAAAGCCGACUGUAGUGGGGG-UGGCUCACUUGGGUUGGCCCAAACUGACUUGGCUGAGGCAUUUUCUUUUGCA (.((((((.((((((.((........((((((...((((..(((-(.((((....))).).))))..))))..)))))).)))))))))))))).). ( -31.30, z-score = -0.48, R) >droSim1.chr3L 9640976 96 - 22553184 GAAAGGGGAAAAUGCUCCAAAGGAAAAGCGGCCGG-GAUGGGGGGUGGCUCACUUGGGUUGGCCCAAACUGACUUGGCUGAGGCAUUUUCUUUUGCA ...(((((((((((((((...)))....(((((((-(.(((.((((.((((....))).).))))...))).))))))))..))))))))))))... ( -36.60, z-score = -1.78, R) >droSec1.super_0 2465954 96 - 21120651 GAAAGGGGCAAAUGCGCUAAAGGAAAAGAGGCCGG-GAUGGGGGCUGGCUCACUUGGGUUGGCCCAAACUGACUUGGCUGAGGCAUUUUCUUUUGCA .......((....))((.((((((((.(.((((((-(..(.((((..((((....))))..))))...)...)))))))....).)))))))).)). ( -37.70, z-score = -2.33, R) >droYak2.chr3L 10238738 97 - 24197627 GAAAGGGGCAAAUGCGCUAAAGGAAAAGCGGCCGACAGUGGGGGUUGGCUCACUUGGGUUGGCCCAAACUGACUUGGCUGAGGCAUUUUCUUUUGCA .......((....))((.(((((((((.(((((((((((..((((..((((....))))..))))..))))..))))))).....))))))))))). ( -42.40, z-score = -3.62, R) >droEre2.scaffold_4784 10243054 96 - 25762168 GGAAGGGGAAAAUGCGCUAAAGGAAAAGCGGCCGUUGGUGGGGG-UGGCUCACUUGGGUUGGCCCAAACUGACUUGGCUGAGGCAUUUUCUUUUGCA .(.(((((((((((((((........)))((((((..((..(((-(.((((....))).).))))..))..))..))))...)))))))))))).). ( -37.90, z-score = -2.39, R) >droAna3.scaffold_13337 15165383 83 - 23293914 AAAAAAGAGAAAUGG---AAAAGAGAAAUGGAAACGAGCGGGG----------UUGGCUUGACUC-AACUGACUUGGCUAAGGCAUUUUCUUUUGCA ............((.---(((((((((.((....))(((.(((----------(..(.(((...)-)))..)))).)))......))))))))).)) ( -21.80, z-score = -2.34, R) >consensus GAAAGGGGCAAAUGCGCUAAAGGAAAAGCGGCCGG_AGUGGGGG_UGGCUCACUUGGGUUGGCCCAAACUGACUUGGCUGAGGCAUUUUCUUUUGCA .................((((((((((.(((((((.(((..(((.((((((....)))))).)))..)))...))))))).....)))))))))).. (-18.17 = -20.15 + 1.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:31 2011