| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,240,658 – 10,240,750 |
| Length | 92 |
| Max. P | 0.621297 |
| Location | 10,240,658 – 10,240,750 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.86 |
| Shannon entropy | 0.45930 |
| G+C content | 0.46372 |
| Mean single sequence MFE | -27.68 |
| Consensus MFE | -15.30 |
| Energy contribution | -15.20 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.621297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10240658 92 - 24543557 --GUUCUGGUGGCGUUCUCAACAUGUUGCCAAGUCAUUAACUUGAGCCUGUUUCUGGCU--UUUGUAGCAUGUUUGUGAUUGCACGAG--GUGGGGAC----------- --..(((.(((.((.((.((((((((((((((((.....)))))((((.......))))--...)))))))).))).)).))))).))--).......----------- ( -28.90, z-score = -1.42, R) >droSec1.super_0 2455595 92 - 21120651 --GUUCUGGUGGCGUUCUCAACAUGUUGCCAAGUCAUUAACUUGAGCCUGUUUCUGGCU--UUUGUAGCAUGUUUGUGAUUACACGAG--GUGGGGAC----------- --...........(((((((((((((((((((((.....)))))((((.......))))--...)))))))))(((((....))))).--.)))))))----------- ( -28.30, z-score = -1.52, R) >droSim1.chr3L 9630601 92 - 22553184 --GUUCUGGUGGCGUUCUCAACAUGUUGCCAAGUCAUUAACUUGAGCCUGUUUCUGGCU--UUUGUAGCAUGUUUGUGAUUACACGAG--GUGGGGAC----------- --...........(((((((((((((((((((((.....)))))((((.......))))--...)))))))))(((((....))))).--.)))))))----------- ( -28.30, z-score = -1.52, R) >droEre2.scaffold_4784 10230206 92 - 25762168 --GUUCUGGUGGCGUUCUCAACAUGUUGCCAAGUCAUUAACUUGAGCCUGUUUCUGGCU--UUUGUAGCAUGUUUGUGAUUACACGAG--GUGGGGAC----------- --...........(((((((((((((((((((((.....)))))((((.......))))--...)))))))))(((((....))))).--.)))))))----------- ( -28.30, z-score = -1.52, R) >droYak2.chr3L 10227822 92 - 24197627 --GUUCUGGUGGCGUUCUCAACAUGUUGCCAAGUCAUUAACUUGAGCCUGUUUCUGGCU--UUUGUAGCAUGUUUGUGAUUACACGAG--GUGGGGAC----------- --...........(((((((((((((((((((((.....)))))((((.......))))--...)))))))))(((((....))))).--.)))))))----------- ( -28.30, z-score = -1.52, R) >droAna3.scaffold_13337 15152686 102 - 23293914 CUGCUCUCGUAGCGUUCUCAACAUGUUGCCAAGUCAUUAACUUGAGCCUGUUUUUGGCU--UUUGUUGCAUGUUUGUGAUUACACGAA-UGUGGGGGCAUACCAA---- .(((((((...((((((..(((((((.((.((((((..(((........)))..)))))--)..)).))))))).(((....))))))-))))))))))......---- ( -32.60, z-score = -2.42, R) >dp4.chrXR_group6 8637953 83 - 13314419 --------GGCGUUCUCUCAACAUGUUGCCAAGUCAUUAACUUGAGCCUGUUUCUGGCUCCUUUGUUGCCUGUUUGUGAUUGCACCAG-GGC----------------- --------((.((..((.(((((.((.((.((((.....))))(((((.......)))))....)).)).)).))).))..)).))..-...----------------- ( -19.30, z-score = 0.34, R) >droPer1.super_27 1078250 83 - 1201981 --------GGCGUUCUCUCAACAUGUUGCCAAGUCAUUAACUUGAGCCUGUUUCUGGCUCCUUUGUUGCCUGUUUGUGAUUACACCAG-GGC----------------- --------((.((..((.(((((.((.((.((((.....))))(((((.......)))))....)).)).)).))).))..)).))..-...----------------- ( -19.00, z-score = 0.04, R) >droWil1.scaffold_181024 1358249 90 + 1751709 ---UUCCUUUCGUUUCCUCAACAUGUUGCCAAGUCAUUAACUUGAGCCUGGCU-UGGCU--UUUGUUACAUGUUUGUGAUUACAACAG--GAGAGGAC----------- ---.(((((((........(((((((.(((((((((............)))))-)))).--......)))))))(((.......))).--))))))).----------- ( -27.10, z-score = -2.57, R) >droVir3.scaffold_13049 16019032 101 - 25233164 -----UUCAAGCUGCAGUCAGCAUGUUGCCAAGUCAUUAACUUGAGCCUGUUU-AGGCU--UUUGUUACAUGUUUGUGAUUACUGUGGCUGCUGCUGCUGCUGUUGCAC -----....(((.((((.(((((.((..(..((((((((((..((((((....-)))))--)..)))).......))))))...)..))))))))))).)))....... ( -37.41, z-score = -2.40, R) >droMoj3.scaffold_6680 4002809 96 + 24764193 ----CUCCACGUUGCAGUCAACAUGUUGCCAAGUCAUUAACUUGAGCCUGUUU-AGGCU--UUUGUUACAUGUUUGUGAUUACUGCUGCUGCUGCUGCUGCAC------ ----......((.((((.((.((.((.((..((((((((((..((((((....-)))))--)..)))).......))))))...)).)))).)))))).))..------ ( -27.01, z-score = -0.83, R) >consensus __GUUCUGGUGGCGUUCUCAACAUGUUGCCAAGUCAUUAACUUGAGCCUGUUUCUGGCU__UUUGUUGCAUGUUUGUGAUUACACGAG__GUGGGGAC___________ ...................(((((((.(((((((.....)))))((((.......)))).....)).)))))))................................... (-15.30 = -15.20 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:28 2011