| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,211,127 – 10,211,225 |
| Length | 98 |
| Max. P | 0.861864 |
| Location | 10,211,127 – 10,211,225 |
|---|---|
| Length | 98 |
| Sequences | 9 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 74.37 |
| Shannon entropy | 0.51728 |
| G+C content | 0.45893 |
| Mean single sequence MFE | -18.77 |
| Consensus MFE | -12.86 |
| Energy contribution | -13.00 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.861864 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10211127 98 + 24543557 ---------CAGUCGCCCUCACUGCCACUCCCAUUUUGCCCAUCGCAUGCCUUCCGUUUUAUUGUUUUACAACAGUUGGCCAAAUACUUUGGCUAGCUAAAAGUUUU ---------.(((.((.......)).))).......(((.....)))........(((.((......)).)))((((((((((.....))))))))))......... ( -16.10, z-score = -0.31, R) >droSim1.chr3L 9600106 98 + 22553184 ---------CAGUCGCCCUCACUACCACUCCCAUUUUGCCCAUCGCAUGCCUUCCGUUUUAUUGUUUUACGACAGUUGGCCAAAUACUUUGGCUAGCUAAAAGUUUU ---------..((((....((.((..((........(((.....)))........))..)).)).....))))((((((((((.....))))))))))......... ( -19.09, z-score = -1.77, R) >droSec1.super_0 2426441 98 + 21120651 ---------CAGUCGCCCUCACUACCACUCCCAUUUUGCCCAUCGCAUGCCUUCCGUUUUAUUGUUUUACGACAGUUGGCCAAAUACUUUGGCUAGCUAAAAGUUUU ---------..((((....((.((..((........(((.....)))........))..)).)).....))))((((((((((.....))))))))))......... ( -19.09, z-score = -1.77, R) >droYak2.chr3L 10197177 92 + 24197627 ---------------CAGUCAUUCCCACUCCCACUCUGCCCAUCGCAUGCCUUCCGUUUUAUUGUUUUACGACAGUUGGCCAAAUACUUUGGCUAGCUAAAACUUUU ---------------.....................(((.....)))........((((((.((((....))))(((((((((.....))))))))))))))).... ( -16.90, z-score = -1.88, R) >droEre2.scaffold_4784 10199593 98 + 25762168 ---------CAGUCAGCCUCACUGUUACACCCAUUCUGCCCAUCGCAUGCCUUCCGUUUUAUUGUUUUACGACAGUUGGCCAAAUACUUUGGCUAGCUAAAAGUUUU ---------..(((.....((.((..((........(((.....)))........))..)).))......)))((((((((((.....))))))))))......... ( -17.19, z-score = -0.36, R) >droAna3.scaffold_13337 15119909 82 + 23293914 ------------------------GGAUCAUCCCGCUCCGGCGGCACCCUCUUCCGUUUUAUUGUUUUACGACAGUUGGCCAAAUACUUUGGCUAGCAAAAGUUUU- ------------------------(((.....((((....))))........)))(((.((......)).))).(((((((((.....))))))))).........- ( -21.72, z-score = -1.61, R) >dp4.chrXR_group6 8603030 95 + 13314419 -----------CUGCCCAUCCCCCUCACCCCUCUGAUGCUUUGCGGCCGCCUUCCGUUUUAUUGUUUUACGACAGUUGGCCAAAUACUUUGGCUAGCUAAAGUUUU- -----------..(((((....(.(((......))).)...)).)))........(((.((......)).)))((((((((((.....))))))))))........- ( -18.60, z-score = -0.64, R) >droPer1.super_27 1043053 95 + 1201981 -----------CUGCCCAUCCCCCUCACCCCUCUGAUGCUUUGCGGCCGCCUUCCGUUUUAUUGUUUUACGACAGUUGGCCAAAUACUUUGGCUAGCUAAAGUUUU- -----------..(((((....(.(((......))).)...)).)))........(((.((......)).)))((((((((((.....))))))))))........- ( -18.60, z-score = -0.64, R) >droVir3.scaffold_13049 15988069 106 + 25233164 CUGUCCCUGGAUUCAUCCUCUGUUUUGCUGUACUUGUGCUCUGCGGCCGCAUUUUGUUUUAUUGUUUUACGGCAGUUGGCCAAAUACUUUGGCUUGCAAAACUUUU- ........(((....)))...(((((((.((....((((...))(((((....((((..((......))..)))).)))))....))....))..)))))))....- ( -21.60, z-score = 0.19, R) >consensus __________AGUCGCCCUCACUCCCACUCCCAUUCUGCCCAUCGCAUGCCUUCCGUUUUAUUGUUUUACGACAGUUGGCCAAAUACUUUGGCUAGCUAAAAGUUUU .......................................................(((.((......)).)))((((((((((.....))))))))))......... (-12.86 = -13.00 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:24 2011