| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,725,804 – 4,725,906 |
| Length | 102 |
| Max. P | 0.914103 |
| Location | 4,725,804 – 4,725,906 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 69.07 |
| Shannon entropy | 0.56346 |
| G+C content | 0.40395 |
| Mean single sequence MFE | -25.74 |
| Consensus MFE | -13.39 |
| Energy contribution | -14.15 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914103 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4725804 102 + 23011544 CCUUUAAUGCCAGGACCUCAUUAU------GAGGCCAAUUAAAGCUCAGAAUGUCCUUUGAAGGUCCUGUCAAUCAAGUGACCAUGUCACAAACUUCAAGGGGCUUUU---------- .(((((((....((.((((.....------)))))).)))))))........(((((((((((....((.....)).(((((...)))))...)))))))))))....---------- ( -32.20, z-score = -2.77, R) >dp4.chr4_group3 572971 103 - 11692001 ------GCUUAUGUGUCUAGGUAG------GAAAGCAAUUAGGAGACAGAAGGAACAUUCAAAACGAU-UGUAUCUAACGAUUAUAUG--AAGGUACAAUAUGACUUAGCUUAGAAAU ------.........(((((((((------(..........(....).(((......)))......((-(((((((............--.)))))))))....))).)))))))... ( -17.52, z-score = -0.61, R) >droSim1.chr2L 4594239 108 + 22036055 CCCUUAAUGCCAGGACCUCAUUAUGAAGCCAAUUGUAAUUGAAUACCAGAAUGUCCUUUGAAGGUCCUGUCAAUCAAGUGACCAUGUCACAAACUUCAAGGGGCUUUU---------- (((((..((.(((((((((((((..(......)..))).)))....((((......))))..))))))).)).....(((((...))))).......)))))......---------- ( -28.70, z-score = -1.71, R) >droSec1.super_5 2802290 108 + 5866729 CCUUUAAUGCCAGGACCUCAUUAUGAAGCCAAUUGUAAUUAAAGACCAGAAUGUCCUUUGAAGGUCCUGUCAAUCAAGUGACCAUGUCACAAACUUCAAGGGGCUUUU---------- (((((..((.((((((((..(((..(......)..)))((((((((......)).)))))))))))))).)).....(((((...))))).......)))))......---------- ( -27.30, z-score = -1.38, R) >droYak2.chr2L 4733542 102 + 22324452 UCCUUAAUGCCGGGACCUCAUUAA------AAUUGUAAUUAAAGCCCAAAAUGUCCUUUAAGGGUCCUGUCAAUCGACUGACCAUGUCACAAACUUCAAGGGGCUUUU---------- (((((..((.((((((((((....------...))...((((((..(.....)..)))))))))))))).))...(((.......))).........)))))......---------- ( -22.00, z-score = -0.47, R) >droEre2.scaffold_4929 4800739 108 + 26641161 CCUUUUAUGCCAGGACCUCAUUACUAUGCCAAUUGUAAUUAAAGCCCAGAAUGUCCUUUAAGGGUCCUGUCAUUCGAGUGACUAUGUCACAAACUUCAAGGAGCUUUC---------- ((((..(((.((((((((..((((.((....)).))))((((((..(.....)..)))))))))))))).)))....(((((...))))).......)))).......---------- ( -26.70, z-score = -1.90, R) >consensus CCUUUAAUGCCAGGACCUCAUUAU______AAUUGUAAUUAAAGCCCAGAAUGUCCUUUGAAGGUCCUGUCAAUCAAGUGACCAUGUCACAAACUUCAAGGGGCUUUU__________ (((((..((.((((((((....................((((((..(.....)..)))))))))))))).)).....(((((...))))).......)))))................ (-13.39 = -14.15 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:19 2011