| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,190,041 – 10,190,093 |
| Length | 52 |
| Max. P | 0.848984 |
| Location | 10,190,041 – 10,190,093 |
|---|---|
| Length | 52 |
| Sequences | 4 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 89.10 |
| Shannon entropy | 0.17194 |
| G+C content | 0.58258 |
| Mean single sequence MFE | -17.52 |
| Consensus MFE | -16.54 |
| Energy contribution | -17.10 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.848984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10190041 52 + 24543557 CAGGCGGGUACCACCAUCCAUUGAACCCGCAUGGAAUCGGUGUA-AAAACGCA ...(((..(((.(((.(((((((....)).)))))...))))))-....))). ( -13.60, z-score = -0.35, R) >droSim1.chr3L 9579322 51 + 22553184 CAGGCGGGUCCCACCAUCU-UUGAACCCGCCUGGCAUCGGUGUA-AAAACGCA (((((((((..((......-.)).)))))))))......((((.-...)))). ( -20.00, z-score = -2.35, R) >droSec1.super_0 2405740 51 + 21120651 CAGGCGGGUCCCACCAUCU-UUGAACCCGCCUGGCAUCGGUGUA-AAAACGCA (((((((((..((......-.)).)))))))))......((((.-...)))). ( -20.00, z-score = -2.35, R) >droYak2.chr3L 10175550 52 + 24197627 CUGGCGGGUCGCACCAUCU-UUGAACCCGCCUGGAAUCGCCGUGGAAAACGCA ..(((((((..((......-.)).))))))).((.....))(((.....))). ( -16.50, z-score = -0.48, R) >consensus CAGGCGGGUCCCACCAUCU_UUGAACCCGCCUGGAAUCGGUGUA_AAAACGCA (((((((((..((........)).)))))))))......((((.....)))). (-16.54 = -17.10 + 0.56)
| Location | 10,190,041 – 10,190,093 |
|---|---|
| Length | 52 |
| Sequences | 4 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 89.10 |
| Shannon entropy | 0.17194 |
| G+C content | 0.58258 |
| Mean single sequence MFE | -19.10 |
| Consensus MFE | -15.18 |
| Energy contribution | -16.18 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.520612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10190041 52 - 24543557 UGCGUUUU-UACACCGAUUCCAUGCGGGUUCAAUGGAUGGUGGUACCCGCCUG .(((..(.-..(((((..(((((.........))))))))))..)..)))... ( -13.90, z-score = -0.18, R) >droSim1.chr3L 9579322 51 - 22553184 UGCGUUUU-UACACCGAUGCCAGGCGGGUUCAA-AGAUGGUGGGACCCGCCUG .(((((..-......)))))(((((((((((..-........))))))))))) ( -22.90, z-score = -3.02, R) >droSec1.super_0 2405740 51 - 21120651 UGCGUUUU-UACACCGAUGCCAGGCGGGUUCAA-AGAUGGUGGGACCCGCCUG .(((((..-......)))))(((((((((((..-........))))))))))) ( -22.90, z-score = -3.02, R) >droYak2.chr3L 10175550 52 - 24197627 UGCGUUUUCCACGGCGAUUCCAGGCGGGUUCAA-AGAUGGUGCGACCCGCCAG ..((((......))))......((((((((((.-......)).)))))))).. ( -16.70, z-score = -0.51, R) >consensus UGCGUUUU_UACACCGAUGCCAGGCGGGUUCAA_AGAUGGUGGGACCCGCCUG ....................(((((((((((...........))))))))))) (-15.18 = -16.18 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:19 2011