Locus 6838

Sequence ID dm3.chr3L
Location 10,185,945 – 10,186,017
Length 72
Max. P 0.938016
window9399

overview

Window 9

Location 10,185,945 – 10,186,017
Length 72
Sequences 8
Columns 72
Reading direction forward
Mean pairwise identity 83.43
Shannon entropy 0.35485
G+C content 0.41520
Mean single sequence MFE -17.24
Consensus MFE -12.73
Energy contribution -12.94
Covariance contribution 0.20
Combinations/Pair 1.41
Mean z-score -1.88
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.44
SVM RNA-class probability 0.938016
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 10185945 72 + 24543557
ACAAGCGGAUAUAAUCUCACACUCGACCACCGCUGAACGUGAUGAGGUACUAAUGUACUUUUUGCAUGUAAA
...(((((.....................)))))..(((((..(((((((....)))))))...)))))... ( -18.00, z-score =  -2.30, R)
>dp4.chrXR_group6 8579059 72 + 13314419
GCUGGCGGAUAUAAUCGGAAACUCGACCAACGUCGGGCAUGAUGAGGUACUAAUGUACUUUUUGCAUGUUAG
.((((((.......((((....))))....))))))(((((..(((((((....)))))))...)))))... ( -21.60, z-score =  -2.60, R)
>droAna3.scaffold_13337 15095523 72 + 23293914
ACAAGCGGAUAUAAUCUCACACUCGACCGCCGGGGAACGUGAUGAGGUACUAAUGUCCUUUUUGCAUGUCAG
(((.((((((((.(((((((((....((....))....))).))))))....)))))).....)).)))... ( -17.00, z-score =  -0.40, R)
>droEre2.scaffold_4784 10174258 72 + 25762168
ACAAGCGGAUAUAAUCUCACACUCGACCACCGCUGAACGUGAUGAGGUACUAAUGUACUUUUUGCAUGUAAA
...(((((.....................)))))..(((((..(((((((....)))))))...)))))... ( -18.00, z-score =  -2.30, R)
>droYak2.chr3L 10171300 72 + 24197627
ACAAGCGGAUAUAAUCUCACACUCGACCACCGCUGAACGUGAUGAGGUACUAAUGUACUUUUUGCAUGUAAA
...(((((.....................)))))..(((((..(((((((....)))))))...)))))... ( -18.00, z-score =  -2.30, R)
>droSec1.super_0 2401547 72 + 21120651
ACAAGCGGAUAUAAUCUCACACUCUACCACCGCUGAACGUGAUGAGGUACUAAUGUACUUUUUGCAUGUAAA
...(((((.....................)))))..(((((..(((((((....)))))))...)))))... ( -18.00, z-score =  -2.64, R)
>droSim1.chr3L 9575198 72 + 22553184
ACAAGCGGAUAUAAUCUCACACUCGACCACCGCUGAACGUGAUGAGGUACUAAUGUACUUUUUGCAUGUAAA
...(((((.....................)))))..(((((..(((((((....)))))))...)))))... ( -18.00, z-score =  -2.30, R)
>droGri2.scaffold_15110 11870461 65 - 24565398
ACAAGAGAACAUUAU-------UCUGGUAAUGUUAGAAAUAAUGAGCCACUAAUGUGCCAUUUACAUGUUAA
........((((((.-------..((((...((((....))))..)))).))))))................ (  -9.30, z-score =  -0.18, R)
>consensus
ACAAGCGGAUAUAAUCUCACACUCGACCACCGCUGAACGUGAUGAGGUACUAAUGUACUUUUUGCAUGUAAA
...(((((.....................)))))..(((((..(((((((....)))))))...)))))... (-12.73 = -12.94 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:18 2011