| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,180,627 – 10,180,733 |
| Length | 106 |
| Max. P | 0.528832 |
| Location | 10,180,627 – 10,180,733 |
|---|---|
| Length | 106 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.18 |
| Shannon entropy | 0.42136 |
| G+C content | 0.47496 |
| Mean single sequence MFE | -31.89 |
| Consensus MFE | -20.73 |
| Energy contribution | -19.93 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10180627 106 + 24543557 ---UGCUGUUGUUGAUUAUGUGGCAAUUAGUUGUCGCUUUUGUGGCAAGCCACGC-----GGCACUUUCAAUCAGAG--CAUCUUAUUCCGACAGCCACA-UAAUGCCCAUCCAGGU ---..(((.((...((((((((((....(((.(((((....((((....))))))-----)))))).....((.(((--.......))).))..))))))-))))...))..))).. ( -29.90, z-score = -0.78, R) >droSim1.chr3L 9569856 106 + 22553184 ---UGCUGUUGUUGAUUAUGUGGCAAUUAGUUGUCGCUUUUGUGGCAAGCCACGC-----GGCACUUUCAAUCAGAG--CAUCUUAUUCCGACAGCCACA-UAAUGCCCAUCCAGGU ---..(((.((...((((((((((....(((.(((((....((((....))))))-----)))))).....((.(((--.......))).))..))))))-))))...))..))).. ( -29.90, z-score = -0.78, R) >droSec1.super_0 2396192 106 + 21120651 ---UGCUGUUGUUGAUUAUGUGGCAAUUAGUUGUCGCUUUUGUGGCAAGCCACGC-----GGCACUUUCAAUCAGAG--CAUCUUAUUCCGACAGCCACA-UAAUGCCCAUCCAGGU ---..(((.((...((((((((((....(((.(((((....((((....))))))-----)))))).....((.(((--.......))).))..))))))-))))...))..))).. ( -29.90, z-score = -0.78, R) >droYak2.chr3L 10165821 106 + 24197627 ---UGCUGUUGUUGAUUAUGUGGCAAUUAGUUGUCGCUUUUGUGGCAAGCCACGC-----GGCACUUUCAAUCAGAG--CAUCUUAUUCCGACAGCCGCA-UAAUGCCCAUCCAGGU ---..(((.((...((((((((((....(((.(((((....((((....))))))-----)))))).....((.(((--.......))).))..))))))-))))...))..))).. ( -29.50, z-score = -0.28, R) >droEre2.scaffold_4784 10168692 106 + 25762168 ---UGCUGUUGUUGAUUAUGUGGCAAUUAGUUGUCGCUUUUGUGGCAAGCCACGC-----GGCACUUUCAAUCAGAG--CAUCUUAUUCCGACAGCCGCA-UAAUGCCCGUCCAGGU ---(((.(((((((.....(((((......(((((((....))))))))))))..-----.((.((.......)).)--).........))))))).)))-....(((......))) ( -29.30, z-score = -0.03, R) >droAna3.scaffold_13337 15090490 105 + 23293914 ---UGCUGUUGUUGAUUAUGUGGCAAUUAGUUGUCGCUUUUGUGGCAAGCCGCGC-----GACACUUUCAAUCAGAU--CAUCUUAUUCCGACAGCCAC--UAAUGCCCAUCCAGGU ---.(((((((..(((.((.(((.....(((.(((((....((((....))))))-----)))))).....))).))--.)))......)))))))...--....(((......))) ( -27.90, z-score = -0.80, R) >dp4.chrXR_group6 8573614 114 + 13314419 UGGGUCUGUUGUUGAUUAUGUGGCAAUUAGUUGUCGCUUUUGUGGCAAGCCGCGACC-AGGACACUUUCAAUCAGAG--AAUCUUAUUCCGACAGACCCGCUAAUGCCCAUCCAGGU .((((((((((........(((((......(((((((....))))))))))))((..-((((..((((.....))))--..))))..))))))))))))......(((......))) ( -36.80, z-score = -2.04, R) >droPer1.super_27 1013251 114 + 1201981 UGGGUCUGUUGUUGAUUAUGUGGCAAUUAGUUGUCGCUUUUGUGGCAAGCCGCGACC-AGGACACUUUCAAUCAGAG--AAUCUUAUUCCGACAGACCCGCUAAUGCCCAUCCAGGU .((((((((((........(((((......(((((((....))))))))))))((..-((((..((((.....))))--..))))..))))))))))))......(((......))) ( -36.80, z-score = -2.04, R) >droWil1.scaffold_181024 1250763 112 - 1751709 ---UCUUGCUACUGAUUAUGUGGCAAUUAGUUGUCGCUUUUGUGGAAAGCCGCGUCG-GCGACACUUUCAAUCAGAAACUGUCUUAUUUUGACAGCCAGG-UAAAGCCUAUCCAACA ---..(((((((.......)))))))...(((((((((..(((((....)))))..)-))((((.((((.....)))).)))).......)))))).(((-.....)))........ ( -35.10, z-score = -2.81, R) >droMoj3.scaffold_6680 3938791 107 - 24764193 ---UGUUGUUGUUCAUUAUGUGGCAAUUAGAUGUCGCAUUUGUGGCGAACCACGAACCAGAACACAUCCGAUCAGGG--UGCUCUUUCUUGACAGCAGG--UGAAGCUGAUUCA--- ---(((((((((((....(((((((......)))))))(((((((....)))))))...)))).(((((.....)))--)).........)))))))..--((((.....))))--- ( -32.20, z-score = -1.02, R) >droVir3.scaffold_13049 15960619 103 + 25233164 ---UGUUGUUGUUGAUUAUGUGGCAAUUAGUUGUCGCUUUUGUGGCAAGCCACGAG----GACACUCCCGAUCGGAC--UAUGUUGCCUUGACAGCAGG--UGAAGCCCUUCGA--- ---..(((((((..(......(((((((((((((((.....((((....))))(((----....))).))))..)))--)).)))))))..))))))).--((((....)))).--- ( -31.20, z-score = -0.85, R) >droGri2.scaffold_15110 11866282 106 - 24565398 ---UGUUGUUGUUGAUUAUGUGGCAAUUAGUUGUCGCUUUUGUGGCAAGCCUCGAC----GACACUUUCGAUCAGAGCAUGUUUGUGCCUGGACGGCAGG-UGAAGCCCAUCUG--- ---...(((((((((......(((......(((((((....)))))))))))))))----))))...(((.((((.((((....)))))))).)))((((-((.....))))))--- ( -34.20, z-score = -1.21, R) >consensus ___UGCUGUUGUUGAUUAUGUGGCAAUUAGUUGUCGCUUUUGUGGCAAGCCACGC_____GACACUUUCAAUCAGAG__CAUCUUAUUCCGACAGCCACA_UAAUGCCCAUCCAGGU ....(((((((.(((((..(((((((....)))))))...(((((....)))))...............)))))((.....))......)))))))..................... (-20.73 = -19.93 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:16 2011