Locus 6834

Sequence ID	dm3.chr3L
Location	10,176,223 – 10,176,276
Length	53
Max. P	0.986491

overview

Window 5

Location	10,176,223 – 10,176,276
Length	53
Sequences	6
Columns	54
Reading direction	forward
Mean pairwise identity	82.16
Shannon entropy	0.33736
G+C content	0.32087
Mean single sequence MFE	-11.30
Consensus MFE	-8.39
Energy contribution	-8.42
Covariance contribution	0.03
Combinations/Pair	1.18
Mean z-score	-2.46
Structure conservation index	0.74
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	2.24
SVM RNA-class probability	0.986491
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 10176223 53 + 24543557
GCAUC-ACCCUUGAUGUCGUGGAACAUGAAUUGAUUAAAUUUGUGUUGAUUUUA
(((((-(....)))))).....((((..((((.....))))..))))....... ( -11.40, z-score =  -1.70, R)
>droSim1.chr3L 9565463 53 + 22553184
GCAUC-ACCCUUGAUAUUGUGGAACAUGAAUUGAUUAAAUUUGUGUUCAUUUUG
..(((-(....))))......(((((..((((.....))))..)))))...... ( -11.20, z-score =  -1.73, R)
>droSec1.super_0 2391812 53 + 21120651
GCAUC-ACCCUUGAUGUUGUGAAACAUGAAUUGAUUAAAUUUGUGUUAAUUUUG
(((((-(....)))))).....((((..((((.....))))..))))....... ( -11.30, z-score =  -2.64, R)
>droYak2.chr3L 10160179 54 + 24197627
GUUUCUACCCUUGAUGUUGUGCAACAUAAAUUGAUUAAAUUUGUGUUGAUGUCG
............(((((....(((((((((((.....)))))))))))))))). ( -11.80, z-score =  -3.05, R)
>droEre2.scaffold_4784 10161892 54 + 25762168
GCAUCUACCCUUUAUGUUGUGCAACAUAAAUUGAUUAAAUUUGUGUUGAUGUCG
((((..((.......)).))))((((((((((.....))))))))))....... ( -10.60, z-score =  -2.12, R)
>droAna3.scaffold_13337 15086229 54 + 23293914
GCUGUUACUCUUUUUUUUGUGGAUCAUAAAUUGAUUAAAUUUGUGUUCCCAACU
................(((.(((.((((((((.....)))))))).)))))).. ( -11.50, z-score =  -3.50, R)
>consensus
GCAUC_ACCCUUGAUGUUGUGGAACAUAAAUUGAUUAAAUUUGUGUUGAUUUCG
.....................(((((((((((.....)))))))))))...... ( -8.39 =  -8.42 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:15 2011