| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,175,348 – 10,175,456 |
| Length | 108 |
| Max. P | 0.792837 |
| Location | 10,175,348 – 10,175,456 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 78.89 |
| Shannon entropy | 0.39519 |
| G+C content | 0.50073 |
| Mean single sequence MFE | -34.15 |
| Consensus MFE | -23.67 |
| Energy contribution | -25.20 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.792837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10175348 108 - 24543557 GAAUUUGAAGCAGAGUGCAAAGGUUGUUGCUGCAGC--CCUAAA-----AAAUAACCACAAAUCGAGUGGGUCAUCGCAAGAUGUUGACCCUGUGGACGGCACUUUUCUGCUGCC ........((((((((((...((((((....)))))--).....-----......(((((........((((((((....))...)))))))))))...))))...))))))... ( -38.10, z-score = -2.96, R) >droSim1.chr3L 9562266 108 - 22553184 GAAUUUGAAGCAGAGUGCAAAGGUUGUAGCUGCAGCACUAAA-------AAGAGACCACAAACCGAGUGGGUCAUCGCAAGAUGUUGACCCUGUGGACGGCACUUUUCUGCUGCC ........((((((((((..(((((((....))))).))...-------......(((((........((((((((....))...)))))))))))...))))...))))))... ( -35.60, z-score = -1.76, R) >droSec1.super_0 2390956 108 - 21120651 GAAUUUGAAGCAGAGUGCAAAGGUUGUAGCUGCAGCACUAAA-------AAGAGACCACAAACCGAGUGGGUCAUCGCAAGAUGUUGACCCUGUGGACGGCACUUUUCUGCUGCC ........((((((((((..(((((((....))))).))...-------......(((((........((((((((....))...)))))))))))...))))...))))))... ( -35.60, z-score = -1.76, R) >droYak2.chr3L 10159257 115 - 24197627 GGAUUUGAAGCAGAGUGCAAAGGUUAUAGCUGCAUCCGUAAAAAGAGACAAAAAGGCACAAACCGAGUGGGUCAUCGCAAGAUGUUGACCCUGUGGACGGCACUCUUCUGCUGCC ........((((((((((..........(((......((........)).....))).....(((...((((((((....))...))))))..)))...))))...))))))... ( -31.80, z-score = -0.29, R) >droEre2.scaffold_4784 10160966 110 - 25762168 GGAUUUGAAGCAGAGUGCAAAGGUUGUAGCUGCAGCAGCAAAAA-----GAGAGACCACAAACCGAGCGGGUCAUCGCAAGAUGUUGACCCUGUGGACGGCACUUUUCUGCUGCC .........((((..((((.....)))).)))).((((((((((-----(.(.(.(((((........((((((((....))...))))))))))).)..).))))).)))))). ( -38.20, z-score = -1.67, R) >droAna3.scaffold_13337 15085501 98 - 23293914 -------------AACCCUGUAAUAAAAGUGGUAGAAACUGAAAG----AGACAGAGGCACACCGAGCGGGUCAUCGCAAAAUGUUGACCCUGUGGACGGCGCUUUUUUGCUGCC -------------..((((((......(((.......))).....----..)))).))....(((...((((((.((.....)).))))))..)))..(((((......)).))) ( -25.62, z-score = -0.19, R) >consensus GAAUUUGAAGCAGAGUGCAAAGGUUGUAGCUGCAGCACCAAAAA_____AAAAAACCACAAACCGAGUGGGUCAUCGCAAGAUGUUGACCCUGUGGACGGCACUUUUCUGCUGCC ........((((((((((....(((((....)))))..........................(((...((((((((....))...))))))..)))...))))...))))))... (-23.67 = -25.20 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:14 2011