| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,170,179 – 10,170,284 |
| Length | 105 |
| Max. P | 0.623677 |
| Location | 10,170,179 – 10,170,284 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 90.77 |
| Shannon entropy | 0.15555 |
| G+C content | 0.40744 |
| Mean single sequence MFE | -23.04 |
| Consensus MFE | -19.96 |
| Energy contribution | -20.00 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623677 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10170179 105 - 24543557 AAAAACCAAAAAAAAAAAAAAACAGAGGAUACAACGAAGUGUAAAGGAGAAGCGAGACUCAUUCAAUGAGUUUCCGUUAGCCAUUUGGUGACUUUGAGCGAGGUU ....((((((..................((((......))))...((...((((((((((((...)))))))).))))..)).))))))((((((....)))))) ( -23.00, z-score = -2.06, R) >droSim1.chr3L 9557113 97 - 22553184 --------AAAAACCAAAAAAACAGAGGAUACAACGAAGUGUAAAGGAGAAGCGAGACUCAUUCAAUGAGUUUCCGUUCGCCAUUUGGUGACUUUGAGCGAGGUU --------....((((((..........((((......))))...((.(((..(((((((((...)))))))))..))).)).))))))((((((....)))))) ( -24.50, z-score = -1.89, R) >droSec1.super_0 2385809 96 - 21120651 ---------AAGACCAAAAAAACAGAGGAUACAACGAAGUGUAAAGGAGAAGCGAGACUCAUUCAAUGAGUUUCCGUUCGCCAUUUGGUGACUUUGAGCGAGGUU ---------...((((((..........((((......))))...((.(((..(((((((((...)))))))))..))).)).))))))((((((....)))))) ( -24.60, z-score = -1.78, R) >droYak2.chr3L 10154022 97 - 24197627 --------AAAAAAACAAAAUGUAGAGGAUACAACGAAGUGUAAAGGAGAAGCGAGACUCAUUCAAUGAGUUUCCGUUCGCCAUUUGGUGACUUUGAGCGAGGUU --------............((((.....)))).....((.(((((.....(.(((((((((...))))))))))..(((((....)))))))))).))...... ( -21.90, z-score = -1.03, R) >droEre2.scaffold_4784 10155794 99 - 25762168 ------AAAGGGGAAAAAAAUACAGAGGAUACAACGAAGUGUAAAGGAGAAGCGAGACUCAUUCAAUGAGUUUCCGUUCGCCAUUUGGUGACUUUGAGCGAGGUU ------................(((((.((((......)))).........(.(((((((((...))))))))))..(((((....))))))))))......... ( -21.20, z-score = -0.50, R) >consensus ________AAAAAAAAAAAAAACAGAGGAUACAACGAAGUGUAAAGGAGAAGCGAGACUCAUUCAAUGAGUUUCCGUUCGCCAUUUGGUGACUUUGAGCGAGGUU ......................(((((.((((......)))).........(.(((((((((...))))))))))..(((((....))))))))))......... (-19.96 = -20.00 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:13 2011