| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,169,704 – 10,169,799 |
| Length | 95 |
| Max. P | 0.923120 |
| Location | 10,169,704 – 10,169,799 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 77.98 |
| Shannon entropy | 0.44460 |
| G+C content | 0.53426 |
| Mean single sequence MFE | -22.19 |
| Consensus MFE | -19.89 |
| Energy contribution | -19.48 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923120 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10169704 95 - 24543557 -CCAACUCGACCUGCCUCG---UCCCUCUGCUGCCACUUUCUUCAUUCUUCUAACCAAAAGCCAUUACGAAGACAGCCCACUAAGUGUGUGGGCGUGGC -.......(((.......)---))........(((((.........(((((.................)))))..((((((.......))))))))))) ( -23.23, z-score = -1.36, R) >droSim1.chr3L 9556628 95 - 22553184 -CCAACUCGACCUCCCUUG---UCCCUCUGCUGGCACUUUCUUCAUUCUUCUAACCAAAAGCCAUUACGAAGACAGCCCACUAAGUGUGUGGGCGUGGC -(((.............((---((..((((.((((.........................)))).)).)).))))((((((.......)))))).))). ( -21.51, z-score = -0.43, R) >droSec1.super_0 2385344 95 - 21120651 -CCAAGUCGACCUCCCUUG---UCCCUCUGCUGCCACUUUCUUCAUUCUUCUAACCAAAAGCCAUUACGAAGACAGCCCACUAAGUGUGUGGGCGUGGC -.((((.........))))---..........(((((.........(((((.................)))))..((((((.......))))))))))) ( -23.13, z-score = -1.31, R) >droYak2.chr3L 10153536 98 - 24197627 -CCACCUCGACCUCCCUCGUCCUCCCUCUGCUGCCACUUUCUUCAUUCUUCUAACCAAAAGCCAUUACGAAGACAGCCCACUAAGUGUGUGGGCGUGGC -.......(((.......)))...........(((((.........(((((.................)))))..((((((.......))))))))))) ( -23.23, z-score = -1.93, R) >droEre2.scaffold_4784 10155300 95 - 25762168 -CCACCUCGACCUCCCUUG---UCCCUCCGCUGCCACUUUCUUCAUUCUUCUAACCAAAAGCCAUUACGAAGACAGCCCACUAAGUGUGUGGGCGUGGC -.......(((.......)---))........(((((.........(((((.................)))))..((((((.......))))))))))) ( -23.13, z-score = -1.86, R) >droAna3.scaffold_13337 15079759 77 - 23293914 ----------------------CCAGCUCCCCUCCUCUCCCUUGGAUCUUAUAACCAAAAGCCAUUAUGAAGACAGCCCACUAAGUGUGUGGGCGUGGC ----------------------..........(((........)))..............(((((..((....))((((((.......))))))))))) ( -18.50, z-score = -0.50, R) >dp4.chrXR_group6 8558778 93 - 13314419 UCUAACCUGCGCACUCUA----CUCCCCAACAGCCGCAAACUCC--UUUUCUAACCAAAAGCCAUUAUGGGAACAGCCCACUAAGUGUGUGGGCGUGGC ..................----..........(((((.......--........(((.((....)).))).....((((((.......))))))))))) ( -22.40, z-score = -0.50, R) >droPer1.super_27 998917 93 - 1201981 UCUAACCUGCGCACUCUA----CUCCCCAACAGCCGCAAACUCC--UUUUCUAACCAAAAGCCAUUAUGGGAACAGCCCACUAAGUGUGUGGGCGUGGC ..................----..........(((((.......--........(((.((....)).))).....((((((.......))))))))))) ( -22.40, z-score = -0.50, R) >consensus _CCAACUCGACCUCCCUUG___UCCCUCUGCUGCCACUUUCUUCAUUCUUCUAACCAAAAGCCAUUACGAAGACAGCCCACUAAGUGUGUGGGCGUGGC ................................(((((.........(((((.................)))))..((((((.......))))))))))) (-19.89 = -19.48 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:12 2011