| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,148,840 – 10,148,908 |
| Length | 68 |
| Max. P | 0.500000 |
| Location | 10,148,840 – 10,148,908 |
|---|---|
| Length | 68 |
| Sequences | 9 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 71.20 |
| Shannon entropy | 0.56779 |
| G+C content | 0.35817 |
| Mean single sequence MFE | -12.34 |
| Consensus MFE | -6.10 |
| Energy contribution | -5.82 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 10148840 68 - 24543557 CCUUAGUUUUUGCGGAAACAAAAAGUGUUGCCUUUCAGCAAUCAAAAUUAAA----UUGGUUGCCACAACAA .....(((((....)))))......(((((.......((((((((.......----))))))))..))))). ( -11.80, z-score = -0.19, R) >droSim1.chr3L 9535484 68 - 22553184 CCUAAGUUUUUGGGGAAACAAAAAGUGUUGCCUUUCAGCGAUCAAAAUUAAA----UUGGUUGCCAUAACAA .....(((..(((((.((((.....)))).)))....((((((((.......----)))))))))).))).. ( -13.00, z-score = -0.44, R) >droSec1.super_0 2364374 68 - 21120651 CCUAAGUUUUUGGGGAAACAAAAAGUGUUGCCUUUCAGCGAUCAAAAUUAAA----UUGGUUGCCAUAACAA .....(((..(((((.((((.....)))).)))....((((((((.......----)))))))))).))).. ( -13.00, z-score = -0.44, R) >droYak2.chr3L 10131344 68 - 24197627 CUUAAGUUUUUCGGGUAACAAAAAGUGUUGCCUUUCGGCUAUCAAAAUUAAA----UUGGUUGCCAUAGCAG .....(((....((((((((.....))))))))...(((.(((((.......----))))).)))..))).. ( -16.80, z-score = -2.45, R) >droEre2.scaffold_4784 10134672 72 - 25762168 CUUAAGUUUUUCGGGAAACAAAAAGUGUUGCCUUUCGGCGAUCAAAAUUAAAUUGCUUGGUUGCCAUAGCAA .....(((....(((.((((.....)))).)))...(((((((((...........)))))))))..))).. ( -15.50, z-score = -0.73, R) >droAna3.scaffold_13337 15059277 54 - 23293914 --------------GCUCCUCAAAGUGUUGCAUUUCAGCAAUCAAAAUUAAA----UUGGUUGCCAUAACAA --------------((..(.......)..))......((((((((.......----))))))))........ ( -8.80, z-score = -1.00, R) >dp4.chrXR_group6 8536949 57 - 13314419 -------------UUUAAGUUCGGGUGUUGCAUUUCAGCAAUCGAAAUUCAA--AAGUGGUUGCCAUAACAA -------------......((((..(((((.....)))))..))))......--..((((...))))..... ( -10.10, z-score = -0.78, R) >droPer1.super_27 976979 57 - 1201981 -------------UUUAAGUUCGGGUGUUGCAUUUCAGCAAUCGAAAUUCAA--AAGUGGUUGCCAUAACAA -------------......((((..(((((.....)))))..))))......--..((((...))))..... ( -10.10, z-score = -0.78, R) >droWil1.scaffold_181024 1204583 63 + 1751709 ----AGUCCUUAACAAAAGCAAGAGUAUUGCAUUUCAGCAAUCAAAUU---A--AAUUGGUUGCCAUAACGA ----..............((((.....))))......((((((((...---.--..))))))))........ ( -12.00, z-score = -2.01, R) >consensus C_U_AGUUUUU_GGGAAACAAAAAGUGUUGCCUUUCAGCAAUCAAAAUUAAA____UUGGUUGCCAUAACAA .........................(((((.......((((((((...........))))))))..))))). ( -6.10 = -5.82 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:11 2011