| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,144,640 – 10,144,693 |
| Length | 53 |
| Max. P | 0.500000 |
| Location | 10,144,640 – 10,144,693 |
|---|---|
| Length | 53 |
| Sequences | 7 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 79.65 |
| Shannon entropy | 0.39167 |
| G+C content | 0.33261 |
| Mean single sequence MFE | -8.99 |
| Consensus MFE | -7.67 |
| Energy contribution | -7.23 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.59 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 10144640 53 + 24543557 AAGUUGAAAGUGAUUUCAAGUUGGGUUACAACUCAAUUUUAUGCUACUUGGGA--- ((((.((((....))))(((((((((....)))))))))......))))....--- ( -9.80, z-score = -0.75, R) >droSim1.chr3L 9531271 54 + 22553184 AAGUUGAAAGUGAUUUUAAGUUGGGUUACAGCUCAAUUUUAUGCUACUUGGGGA-- .......(((((.....(((((((((....))))))))).....))))).....-- ( -10.50, z-score = -0.99, R) >droSec1.super_0 2360232 54 + 21120651 AAGUUGAAAGUGAUUUUAAGUUGGGUUACAGCUCAAUUUUAUGCUACUUGGGGA-- .......(((((.....(((((((((....))))))))).....))))).....-- ( -10.50, z-score = -0.99, R) >droYak2.chr3L 10127001 53 + 24197627 AAGUUGAAAGUGAUUUUAAGUUGGGUAACAGCUCAAUUU-AUGCUACUUGGGGA-- .......(((((....((((((((((....)))))))))-)...))))).....-- ( -11.50, z-score = -1.59, R) >droEre2.scaffold_4784 10130433 54 + 25762168 AAGUUGAAAGUGAUUUUAAGUUGGGUUACAGCUCAAUUUUAUGCUACUUGGGGA-- .......(((((.....(((((((((....))))))))).....))))).....-- ( -10.50, z-score = -0.99, R) >droAna3.scaffold_13337 15055482 53 + 23293914 AAGUUGAAAGUGAUUCUAAAAUGGGUAACGGCUCAAUUUUGUUAUGUUUUUGA--- (((((((..((.((((......)))).))...)))))))..............--- ( -6.50, z-score = -0.08, R) >droVir3.scaffold_12855 332511 55 - 10161210 CUGCUGCAAGU-AUUUCAAGUCGGAUUAAAAUUUAAUUUUCAGAUAUUCUUUGAAA (((((......-......)).))).............(((((((.....))))))) ( -3.60, z-score = 1.29, R) >consensus AAGUUGAAAGUGAUUUUAAGUUGGGUUACAGCUCAAUUUUAUGCUACUUGGGGA__ .......(((((.....(((((((((....))))))))).....)))))....... ( -7.67 = -7.23 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:10 2011