| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,135,892 – 10,135,989 |
| Length | 97 |
| Max. P | 0.574564 |
| Location | 10,135,892 – 10,135,989 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 77.88 |
| Shannon entropy | 0.45423 |
| G+C content | 0.36182 |
| Mean single sequence MFE | -21.58 |
| Consensus MFE | -13.13 |
| Energy contribution | -14.04 |
| Covariance contribution | 0.91 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.574564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10135892 97 - 24543557 AUUUGAACUCUUCGCAAUCGCCGCUAAUGACGAUGUUGGCGGUGUGAUUUUAUGAAUUAAAUUUAUCGCUCAACUCAAUUAAAUUAGCUGCGGUUAG- ...............((((((.((((((......((((((((((.(((((........))))))))))).))))........)))))).))))))..- ( -26.24, z-score = -2.51, R) >droSim1.chr3L 9517135 97 - 22553184 AUUUGAACUUUUUGCAAUCGGCGCUAAUGACGAUGUUGGCGGUGUGAUUUUAUGAAUUAAAUUUAUCGCUCAACUCAAUUAAAUUAGCUGCGGUUAG- ...............(((((..((((((......((((((((((.(((((........))))))))))).))))........))))))..)))))..- ( -21.54, z-score = -0.96, R) >droSec1.super_0 2351582 97 - 21120651 AUUUGAACUUUUUGCAAUCGGCGCUAAUGACGAUGUUGGCGGUGUGAUUUUAUGAAUUAAAUUUAUCGCUCAACUCAAUUAAAUUAGCUGCGGUUAG- ...............(((((..((((((......((((((((((.(((((........))))))))))).))))........))))))..)))))..- ( -21.54, z-score = -0.96, R) >droYak2.chr3L 10117448 97 - 24197627 AUUUGAACUCUUUGCAAUCGACGCUAAUGACGAUGUUGGCGGUGUGAUUUUAUGAAUUUAAUUUAUCGCUCAACUCAAUUAAAUUAGCUGCGGUGAG- .......(((.(((((......((((((......((((((((((.(((((...))))).....)))))).))))........))))))))))).)))- ( -21.24, z-score = -0.93, R) >droEre2.scaffold_4784 10119989 97 - 25762168 AUUUGAACUCUUUGCAGUCGCCGCUAAUGAGGAUGUUGGCGGUGUGAUUUUAUGAAUUAAAUUUAUCGCUCAACUCAAUUAAAUUAGCUGCGGUUAG- ...............(..(((.((((((...((.((((((((((.(((((........))))))))))).))))))......)))))).)))..)..- ( -25.60, z-score = -1.93, R) >droAna3.scaffold_13337 15047007 96 - 23293914 UUUUGAACUCUUUGCAAUUCCUGCUAAUGAUGAUGUUGAUGGUGUGAUUUCACAAAUUGAAUUUAUCACUCAGCUGAAUUAAAUUAGC-GUGGUUAG- .....((((...((((((((..(((..((((((..(..((..((((....)))).))..)..))))))...))).)))))......))-).))))..- ( -18.80, z-score = -0.63, R) >droWil1.scaffold_181024 1180419 96 + 1751709 AAUUCAACAUGUGCCAAUAGCCUGACGAAUUCAUGACACAAUUGUGCAUGAAAAUGUGAAUUGCAUAACUUGAUUC--UCAUAAUAACCAUCAUUAGC ...((((..(((((.(((....(.(((..((((((.(((....)))))))))..))).)))))))))..))))...--.................... ( -16.10, z-score = -0.05, R) >consensus AUUUGAACUCUUUGCAAUCGCCGCUAAUGACGAUGUUGGCGGUGUGAUUUUAUGAAUUAAAUUUAUCGCUCAACUCAAUUAAAUUAGCUGCGGUUAG_ ...............(((((..((((((......((((((((((.(((((........))))))))))).))))........))))))..)))))... (-13.13 = -14.04 + 0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:07 2011