| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,115,126 – 10,115,239 |
| Length | 113 |
| Max. P | 0.806368 |
| Location | 10,115,126 – 10,115,239 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 97.35 |
| Shannon entropy | 0.04308 |
| G+C content | 0.58186 |
| Mean single sequence MFE | -38.49 |
| Consensus MFE | -36.94 |
| Energy contribution | -37.19 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783792 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10115126 113 + 24543557 CAGUUGGUAAGCCGUUCUGGCCCAGCCAAGCCGACCACGCCGGGUCCUUCUGGUCCUUUCUGGCCACAUUAUAAACAACACGGCCAGCCGGCGAUAACAUGGCCGCAACAACA ..((((....(((((..((((........))))....(((((((.((....)).))...((((((................)))))).))))).....))))).....)))). ( -38.19, z-score = -1.20, R) >droSim1.chr3L 9496205 113 + 22553184 CAGUUGGUAAGCCGUUCUGGCCCAACCAAGCCGACCACGCCGGGUCCUUCUGGUCCUUUCUGGCCACAUUAUAAACAACACGGCCAGCCGGCGAUAACAUGGCCGCAACAACA ..((((....(((((..((((........))))....(((((((.((....)).))...((((((................)))))).))))).....))))).....)))). ( -38.19, z-score = -1.61, R) >droSec1.super_0 2330844 113 + 21120651 CAGUUGGUAAGCCGUUUUGGCCCAACCAAGCCGACCACGCCGGGUCCUUCUGGUCCUUUCUGGCCACAUUAUAAACAACACGGCCAGCCGGCGAUAACAUGGCCGCAACAACA ..((((....(((((.(((((........)))))...(((((((.((....)).))...((((((................)))))).))))).....))))).....)))). ( -39.29, z-score = -1.92, R) >droEre2.scaffold_4784 10099182 113 + 25762168 CAGUUGGUAAGCCGUUCUGGCCCAACCAGGCCGACCACGCCGGGUCCUUCUGCUCCUUCCUGGCCACAUUAUAAACAACACGGCCAGCCGGCGAUAACAUGGCCGCAGCAACA ..((((.(..(((((..(((((......)))))....((((((((......))......((((((................)))))))))))).....)))))...).)))). ( -38.29, z-score = -1.04, R) >consensus CAGUUGGUAAGCCGUUCUGGCCCAACCAAGCCGACCACGCCGGGUCCUUCUGGUCCUUUCUGGCCACAUUAUAAACAACACGGCCAGCCGGCGAUAACAUGGCCGCAACAACA ..((((....(((((..((((........))))....(((((((.((....)).))...((((((................)))))).))))).....))))).....)))). (-36.94 = -37.19 + 0.25)
| Location | 10,115,126 – 10,115,239 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 97.35 |
| Shannon entropy | 0.04308 |
| G+C content | 0.58186 |
| Mean single sequence MFE | -46.18 |
| Consensus MFE | -44.62 |
| Energy contribution | -44.88 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10115126 113 - 24543557 UGUUGUUGCGGCCAUGUUAUCGCCGGCUGGCCGUGUUGUUUAUAAUGUGGCCAGAAAGGACCAGAAGGACCCGGCGUGGUCGGCUUGGCUGGGCCAGAACGGCUUACCAACUG ........((((((......(((((((((((((..(((....)))..)))))))......((....))..))))))))))))..((((.((((((.....))))))))))... ( -46.70, z-score = -1.55, R) >droSim1.chr3L 9496205 113 - 22553184 UGUUGUUGCGGCCAUGUUAUCGCCGGCUGGCCGUGUUGUUUAUAAUGUGGCCAGAAAGGACCAGAAGGACCCGGCGUGGUCGGCUUGGUUGGGCCAGAACGGCUUACCAACUG ........((((((......(((((((((((((..(((....)))..)))))))......((....))..))))))))))))..(((((.(((((.....))))))))))... ( -46.70, z-score = -1.81, R) >droSec1.super_0 2330844 113 - 21120651 UGUUGUUGCGGCCAUGUUAUCGCCGGCUGGCCGUGUUGUUUAUAAUGUGGCCAGAAAGGACCAGAAGGACCCGGCGUGGUCGGCUUGGUUGGGCCAAAACGGCUUACCAACUG ........((((((......(((((((((((((..(((....)))..)))))))......((....))..))))))))))))..(((((.(((((.....))))))))))... ( -46.70, z-score = -1.87, R) >droEre2.scaffold_4784 10099182 113 - 25762168 UGUUGCUGCGGCCAUGUUAUCGCCGGCUGGCCGUGUUGUUUAUAAUGUGGCCAGGAAGGAGCAGAAGGACCCGGCGUGGUCGGCCUGGUUGGGCCAGAACGGCUUACCAACUG .((((..(((((((......(((((((((((((..(((....)))..)))))))(......)........)))))))))))(((((....)))))......))....)))).. ( -44.60, z-score = -0.42, R) >consensus UGUUGUUGCGGCCAUGUUAUCGCCGGCUGGCCGUGUUGUUUAUAAUGUGGCCAGAAAGGACCAGAAGGACCCGGCGUGGUCGGCUUGGUUGGGCCAGAACGGCUUACCAACUG ........((((((......(((((((((((((..(((....)))..)))))))......((....))..))))))))))))...(((.((((((.....))))))))).... (-44.62 = -44.88 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:06 2011