| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,110,045 – 10,110,140 |
| Length | 95 |
| Max. P | 0.560935 |
| Location | 10,110,045 – 10,110,140 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 78.82 |
| Shannon entropy | 0.43960 |
| G+C content | 0.48949 |
| Mean single sequence MFE | -23.47 |
| Consensus MFE | -14.72 |
| Energy contribution | -14.73 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.560935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10110045 95 - 24543557 -CCAC-CGAGACC-GAGCCUGACAAUAGUUUAUGGCACAAGUGUUAAAUAUUUUUGUUUGGCACGCCAAUGCUCC-GAACGGAACUAACAGGACCUCCC------------- -....-.......-(((((((......((...((((....((((((((((....))))))))))))))..))(((-....))).....))))..)))..------------- ( -23.90, z-score = -1.76, R) >droSim1.chr3L 9491086 95 - 22553184 -CCAC-CGAGACC-GAGCCUGACAAUAGUUUAUGGCACAAGUGUUAAAUAUUUUUGUUUGGCACGCCAAUGCUCC-GAGCGGAACUCACAGGACCUCCC------------- -....-.(((.((-((((..(((....)))..((((....((((((((((....))))))))))))))..)))).-(((.....)))...))..)))..------------- ( -24.20, z-score = -1.25, R) >droSec1.super_0 2325785 95 - 21120651 -CCAC-CGAGACC-GAGCCUGACAAUAGUUUAUGGCACAAGUGUUAAAUAUUUUUGUUUGGCACGCCAAUGCUUC-GAGCGGAACUCACAGGACCUCCC------------- -....-.......-(((((((.....(((...((((....((((((((((....))))))))))))))..)))..-(((.....))).))))..)))..------------- ( -23.90, z-score = -1.18, R) >droYak2.chr3L 10090450 95 - 24197627 -CCAC-CGAGACC-GAGCCUGACAAUAGUUUAUGGCACAAGUGUUAAAUAUUUUUGUUUGGCACGCCAAUGCUCG-GAGCGGAACUCACAGGACCUCCC------------- -...(-((...((-((((..(((....)))..((((....((((((((((....))))))))))))))..)))))-)..)))........((....)).------------- ( -29.70, z-score = -2.63, R) >droEre2.scaffold_4784 10090154 95 - 25762168 -CCAC-CGAAACC-GAGCCUGACAAUAGUUUAUGGCACAAGUGUUAAAUAUUUUUGUUUGGCACGCCAAUGCUCC-GAGCGGAACUCACAGGACCUCCC------------- -....-.......-(((((((......((...((((....((((((((((....))))))))))))))..))(((-....))).....))))..)))..------------- ( -23.90, z-score = -1.32, R) >droAna3.scaffold_13337 15021690 95 - 23293914 -CCGC-CGAAACC-GAGCCUGACAAUAGUUUAUGGCACAAGUGUUAAAUAUUUUUGUUUGGCACGCCAAUGCCCU-GAGCGGAACUCACACCCCCGCCC------------- -((((-((....)-).)).........(((((.((((...((((((((((....)))))))))).....)))).)-)))))).................------------- ( -24.20, z-score = -1.61, R) >dp4.chrXR_group6 5788700 96 + 13314419 -CCGC-CAAGACCAAAGCCUGACAAUAGUUUAUGGCACAAGUGUUAAAUAUUUUUGUUUGGCACGCCAAUGCCCC-GAGCGGAACUCACACAAGCUCCC------------- -((((-(.........(((.(((....)))...)))....((((((((((....))))))))))...........-).)))).................------------- ( -23.00, z-score = -1.23, R) >droPer1.super_27 933625 96 - 1201981 -CCGC-CAAGACCAAAGCCUGACAAUAGUUUAUGGCACAAGUGUUAAAUAUUUUUGUUUGGCACGCCAAUGCCCC-GAGCGGAACUCACACAAGCGCCC------------- -((((-(.........(((.(((....)))...)))....((((((((((....))))))))))...........-).)))).................------------- ( -23.00, z-score = -0.82, R) >droWil1.scaffold_181024 1139120 99 + 1751709 GUAGCGGGAGGCCCGUUUCUGACAAUAGUUUAUGGCACAAGUGUUAAAUAUUUUUGUUUGGCACGCCAAUGCCCCUAAGCGGAACCCACAACAACUCUC------------- ((.(.(((...((.(((...)))....(((((.((((...((((((((((....)))))))))).....))))..)))))))..))).).)).......------------- ( -25.80, z-score = -0.75, R) >droVir3.scaffold_13049 15880217 93 - 25233164 --CCAUCUAGACC---AUCUGACAAUAGUUUAUGGCACAAGUGUUAAAUAUUUUUGUUUGGCACGCCAAUGCCCC--AAUACAACCCAACCAGCUAACCA------------ --.....(((((.---((......)).))))).((((...((((((((((....)))))))))).....))))..--.......................------------ ( -15.10, z-score = -0.44, R) >droMoj3.scaffold_6680 3846067 105 + 24764193 --CCCCUGGAACC---AUCCGACAAUUGUUUAUAGCACAAGUGUUAAAUAUUUUUGCUUGGCACGCCAGUGCACU--ACAACAGCCCAGCAAUCCAGCUGCCCGUCUGCCCC --.....(((...---.)))(((..(((((....((((..(((((((.((....)).)))))))....))))...--..)))))..((((......))))...)))...... ( -22.30, z-score = -0.53, R) >droGri2.scaffold_15110 11800923 101 + 24565398 ------CGAGACC---AUCUGACAAUAGUUUAUGGCACAAGUGUUAAGUAUUUUUGUUUGGCACGCCAAUGCUCU-GAAGGCAGUCCAACUGCCAACCCAACUG-CUACCCA ------.(((.((---((..(((....))).)))).....((((((((((....)))))))))).......))).-...(((((.....)))))..........-....... ( -22.70, z-score = -0.06, R) >consensus _CCAC_CGAGACC_GAGCCUGACAAUAGUUUAUGGCACAAGUGUUAAAUAUUUUUGUUUGGCACGCCAAUGCUCC_GAGCGGAACUCACAGGACCUCCC_____________ ...........................((((..((((...((((((((((....)))))))))).....))))...))))................................ (-14.72 = -14.73 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:05 2011