| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,102,339 – 10,102,505 |
| Length | 166 |
| Max. P | 0.552679 |
| Location | 10,102,339 – 10,102,505 |
|---|---|
| Length | 166 |
| Sequences | 5 |
| Columns | 192 |
| Reading direction | forward |
| Mean pairwise identity | 78.13 |
| Shannon entropy | 0.37620 |
| G+C content | 0.35667 |
| Mean single sequence MFE | -42.99 |
| Consensus MFE | -28.60 |
| Energy contribution | -29.32 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.552679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10102339 166 + 24543557 UAUCACAACGGUCAUAGGUAAUGGGAAUUUUCCGAUUUGGAAAAACGUGUUAGGAGCCCUUAUGAAUAGAGUCCCAUUGAUAAUAUUGUUA---------AAUAAAUAACACUUUACAGAUCAGCAUGAAGUUAAAUGAUUUAUAGCUUUGCGCACAUUUACAAUAGA-UAGAACC---------------- ((((.....((((.....((((((((.((((((.....)))))).((((..(((...))))))).......)))))))).......(((((---------......))))).......)))).((..(((((((.........)))))))..))............))-)).....---------------- ( -32.00, z-score = -0.75, R) >droEre2.scaffold_4784 10082788 192 + 25762168 UAUCACAACGGUCAUAGGUAAUGGGAAUUUUCCUAUUUGGAAAAACCUGCUGGGAGCCUUGAUGAAUGGAGGCCCAUUGAUAAGGCUGCUGAAUAAGCUUAGUAAAUAACACUUUACAGAUCAGCAUUAGGCUAAGUGAUUUAUAGCUUUAUUCGGAUGUUCUUAAUAAUGUUAUCACAUGUAAAUAGUAGC .(((((...((((..(((((((((((....))))))).......))))(((((.(((((((.(.(((((....))))).))))))))(((.....)))...(((((......)))))...)))))....))))..))))).....((((((((.(.((((...((((...))))..)))).).))))).))) ( -47.21, z-score = -0.67, R) >droYak2.chr3L 10082927 189 + 24197627 UAUCACAACGCUCGUGGGUAAUGGGAAUUUUCCGAUUUGGAAAAACGUGUUAGACGCCUUGAUGAAUGGAGUUCCAUUGAUUAGGUUGUUGAAUAUGCCUAGUAAAUAACACUUUACAAAUCAGCAUUAAGCUAAAUGAUUUAUGGCUGUGUGCAGAUGUUCUCAAUC---UAAUCACAUGCAAAUAGAGCC .........(((((((..(((((.(..((((((.....)))))).).)))))..))).(((((((((((....)))))((((((((((..((((((.....(((((......)))))......((((..(((((.........)))))..))))..)))))).)))))---))))).))).)))...)))). ( -51.30, z-score = -2.02, R) >droSec1.super_0 2318299 170 + 21120651 UAUAACAACGGUCAUAGGUAAUGGGAAUUUUCCGAUUUGGGAAAACGUGUUGGGAGCCCUUAUGAAAGGAGUCCCAUUGAUAAUAUUGUUGUAUAAGCUUAGUAAAUAACACUUUACAGAUCAGCAUGAUGUUAAAUGAUUUAUAGCUUUGUGCACAUU-----UAGA-UGGAACC---------------- ........(.(((.....((((((((..((((((((.((......)).)))))))).((((....))))..)))))))).......(((.(((((((((..(((((......)))))((((((.............))))))..))).)))))))))..-----..))-).)....---------------- ( -37.62, z-score = -0.38, R) >droSim1.chr3L 9483231 170 + 22553184 UAUCACAACGGUCAUAGGUAAUGGGAAUUUUCCGAUUUGGAAAAACGUGUUGGGAGCCCUUAUGAAUGGAGUCCCAUUGAUAAUAUUGUUGUAUGAGCUUAGUAAAUAACACUUUACAGAUCAGCAUAAAGCUAAAUGAUUUAUAGCUUUGUGCUCAUU-----UAGA-UGGAACC---------------- ((((((((((((......((((((((..((((((((.((......)).)))))))).((........))..)))))))).....)))))))).........(((((......)))))((((.((((((((((((.........)))))))))))).)))-----).))-)).....---------------- ( -46.80, z-score = -2.68, R) >consensus UAUCACAACGGUCAUAGGUAAUGGGAAUUUUCCGAUUUGGAAAAACGUGUUGGGAGCCCUUAUGAAUGGAGUCCCAUUGAUAAUAUUGUUGAAUAAGCUUAGUAAAUAACACUUUACAGAUCAGCAUGAAGCUAAAUGAUUUAUAGCUUUGUGCACAUUU_C__UAGA_UGGAACC________________ .....(((((((......((((((((.((((((.....)))))).(((...((....))..))).......)))))))).....)))))))..........(((((......)))))......(((((((((((.(.....).)))))))))))...................................... (-28.60 = -29.32 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:03 2011