| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,077,988 – 10,078,085 |
| Length | 97 |
| Max. P | 0.586558 |
| Location | 10,077,988 – 10,078,085 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 93.04 |
| Shannon entropy | 0.15153 |
| G+C content | 0.34407 |
| Mean single sequence MFE | -20.11 |
| Consensus MFE | -18.36 |
| Energy contribution | -18.20 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10077988 97 + 24543557 UGUCGCCAAUAUCCCAAUGGCAAUCGAUGAAAAUUUAUAGAAAAUUGCGCACAAAUAAAAUUUUACGUUUGUUUGCUUUUUUCAUUUACGAUGCCGG------------- .................(((((.(((((((....)))).(((((..(((.((((((..........)))))).)))..))))).....)))))))).------------- ( -19.90, z-score = -1.25, R) >dp4.chrXR_group6 5752576 97 - 13314419 UGUCGCCAAUAUCCCAAUGGCAAUCGAUGAAAAUUUAUAGAAAAUUGCGCACAAAUAAAAUUUUACGUUUGUUUGCUUUUUUCAUUUACGACGGCGG------------- .(((((((.........))))..(((((((....)))).(((((..(((.((((((..........)))))).)))..))))).....))).)))..------------- ( -19.90, z-score = -0.93, R) >droPer1.super_27 896479 97 + 1201981 UGUCGCCAAUAUCUCAAUGGCAAUCGAUGAAAAUUUAUAGAAAAUUGCGCACAAAUAAAAUUUUACGUUUGUUUGCUUUUUUCAUUUACGACGGCGG------------- .(((((((.........))))..(((((((....)))).(((((..(((.((((((..........)))))).)))..))))).....))).)))..------------- ( -19.90, z-score = -1.11, R) >droAna3.scaffold_13337 14989435 105 + 23293914 UGUCGCCAAUAUCCCAAUGGCAAUCGAUGAAAAUUUAUAGAAAAUUGCGCACAAAUAAAAUUUUACGUUUGUUUGCUUUUUUCAUUUACGAUGCCGGCUUCCUCC----- ....(((.((......))((((.(((((((....)))).(((((..(((.((((((..........)))))).)))..))))).....)))))))))).......----- ( -21.90, z-score = -1.73, R) >droEre2.scaffold_4784 10057428 97 + 25762168 UGUCGCCAAUAUCCCAAUGGCAAUCGAUGAAAAUUUAUAGAAAAUUGCGCACAAAUAAAAUUUUACGUUUGUUUGCUUUUUUCAUUUACGAUGCCGG------------- .................(((((.(((((((....)))).(((((..(((.((((((..........)))))).)))..))))).....)))))))).------------- ( -19.90, z-score = -1.25, R) >droYak2.chr3L 10056435 97 + 24197627 UGUCGCCAAUAUCCCAAUGGCAAUCGAUGAAAAUUUAUAGAAAAUUGCGCACAAAUAAAAUUUUACGUUUGUUUGCUUUUUUCAUUUACGAUGCCGG------------- .................(((((.(((((((....)))).(((((..(((.((((((..........)))))).)))..))))).....)))))))).------------- ( -19.90, z-score = -1.25, R) >droSim1.chr3L 9458172 97 + 22553184 UGUCGCCAAUAUCCCAAUGGCAAUCGAUGAAAAUUUAUAGAAAAUUGCGCACAAAUAAAAUUUUACGUUUGUUUGCUUUUUUCAUUUACGAUGCCGG------------- .................(((((.(((((((....)))).(((((..(((.((((((..........)))))).)))..))))).....)))))))).------------- ( -19.90, z-score = -1.25, R) >droSec1.super_0 2293230 97 + 21120651 UGUCGCCAAUAUCCCAAUGGCAAUCGAUGAAAAUUUAUAGAAAAUUGCGCACAAAUAAAAUUUUACGUUUGUUUGCUUUUUUCAUUUACGAUGCCGG------------- .................(((((.(((((((....)))).(((((..(((.((((((..........)))))).)))..))))).....)))))))).------------- ( -19.90, z-score = -1.25, R) >droVir3.scaffold_13049 15848887 106 + 25233164 UGUCGCCAAUAUCCCAAUGGCAAUCGAUGAAAAUUUAUAGAAAAUUGCGCACAAAUAAAAUUUUACGUUUGUUUGCUUUUUUCAUUUACGACAGCACGGCAGCACG---- ((((((((.........))))..................(((((..(((.((((((..........)))))).)))..)))))......))))((......))...---- ( -21.80, z-score = -1.03, R) >droMoj3.scaffold_6680 3808402 97 - 24764193 UGUCGCCAAUAUCCCAAUGGCAAUCAAUGAAAAUUUAUAGAAAAUUGCGCACAAAUAAAAUUUUACGUUUGUUUGCUUUUUUCAUUUACGACGGCAG------------- ((((((((.........))))..................(((((..(((.((((((..........)))))).)))..))))).........)))).------------- ( -19.80, z-score = -1.66, R) >droGri2.scaffold_15110 11770461 109 - 24565398 UGUCGCCAAUAUCCCAAUGGCAAUCGAUGAAAAUUUAUAGAAAAUUGCGCACAAAUAAAAUUUUACGUUUGUUUGCUUUUU-CAUUUACGACGGCAGCAAACAACCCACA ((((((((.........))))..(((((((....)))).(((((..(((.((((((..........)))))).))).))))-).....))).)))).............. ( -18.70, z-score = -0.32, R) >droWil1.scaffold_181024 1018904 97 - 1751709 UGUCGCCAAUAUCCCAAUGGCAAUCGAUGAAAAUUUAUAGAAAAUUGCGCACAAAUAAAAUUUUACGUUUGUUUGCUUUUUUCAUUUACGAUGUUGG------------- .....((((((((............(((....)))....(((((..(((.((((((..........)))))).)))..)))))......))))))))------------- ( -19.80, z-score = -1.29, R) >consensus UGUCGCCAAUAUCCCAAUGGCAAUCGAUGAAAAUUUAUAGAAAAUUGCGCACAAAUAAAAUUUUACGUUUGUUUGCUUUUUUCAUUUACGAUGCCGG_____________ .(((((((.........))))..................(((((..(((.((((((..........)))))).)))..)))))......))).................. (-18.36 = -18.20 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:15:00 2011